thanks Henrik. The output is:
[1] "GenomeWideSNP_6,Full.cdf" [2] "GenomeWideSNP_6,HB20080710.acs" [3] "GenomeWideSNP_6,na31,hg19,HB20110328.ufl" [4] "GenomeWideSNP_6,na31,hg19,HB20110328.ugp" On Tuesday, June 26, 2012 11:51:49 PM UTC-4, Henrik Bengtsson wrote: > > Following the troubleshooting of annotationData/ on > http://aroma-project.org/troubleshooting/DirectoryStructures using > chipType <- "GenomeWideSNP_6", what does print(list.files(path=path)) > output? > > /Henrik > > On Tue, Jun 26, 2012 at 8:04 PM, Andrew <andysure...@gmail.com> wrote: > > I feel it might be better to post my question in this thread, as I have > > encountered the same error. > > > > I've downloaded ufl, ugp, and acs files from AROMA SNP6 webpage, and the > > Full cdf file from Affymetrix. And I still got the same kind error > NT_CMU > > got for "getGenomeInformation". > > > > Could you please give me a hint, where should I look for? Thanks! > > > > > > On Monday, June 18, 2012 4:58:19 PM UTC-4, NT_CMU wrote: > >> > >> Hi > >> > >> I'm trying to run the command "doCRMAv2", and i get these errors. Let > me > >> know what the problem is, if any of you have encountered this before. I > >> thought i did not have some library installed but, i have both ACNE and > >> aroma.affymetrix working properly. > >> > >> > ds <- doCRMAv2("LeeAV_2012",chipType="GenomeWideSNP_6,Full") > >> Error in getGenomeInformation.AffymetrixCdfFile(cdf) : > >> [2012-06-18 16:55:10] Exception: Failed to retrieve genome information > for > >> this chip type: GenomeWideSNP_6 > >> > >> at #12. getGenomeInformation.AffymetrixCdfFile(cdf) > >> - getGenomeInformation.AffymetrixCdfFile() is in environment > >> 'aroma.affymetrix' > >> > >> at #11. getGenomeInformation(cdf) > >> - getGenomeInformation() is in environment 'aroma.affymetrix' > >> > >> at #10. getSubsetToAvg.AllelicCrosstalkCalibration(this) > >> - getSubsetToAvg.AllelicCrosstalkCalibration() is in > environment > >> 'aroma.affymetrix' > >> > >> at #09. getSubsetToAvg(this) > >> - getSubsetToAvg() is in environment 'aroma.affymetrix' > >> > >> at #08. getParameters.AllelicCrosstalkCalibration(this) > >> - getParameters.AllelicCrosstalkCalibration() is in > environment > >> 'aroma.affymetrix' > >> > >> at #07. getParameters(this) > >> - getParameters() is in environment 'R.rsp' > >> > >> at #06. process.AllelicCrosstalkCalibration(acc, verbose = verbose) > >> - process.AllelicCrosstalkCalibration() is in environment > >> > >> > >> Thanks > >> > >> Nitesh > > > > -- > > When reporting problems on aroma.affymetrix, make sure 1) to run the > latest > > version of the package, 2) to report the output of sessionInfo() and > > traceback(), and 3) to post a complete code example. > > > > > > You received this message because you are subscribed to the Google > Groups > > "aroma.affymetrix" group with website http://www.aroma-project.org/. > > To post to this group, send email to aroma-affymetrix@googlegroups.com > > To unsubscribe and other options, go to > http://www.aroma-project.org/forum/ > -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
