Hi Henrik
when i run the two samples in a same directory ( a new (re) run without others pairs) . The results are ok. my details: sessionInfo() R version 3.0.1 (2013-05-16) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=es_ES.UTF-8 LC_NUMERIC=C [3] LC_TIME=es_ES.UTF-8 LC_COLLATE=es_ES.UTF-8 [5] LC_MONETARY=es_ES.UTF-8 LC_MESSAGES=es_ES.UTF-8 [7] LC_PAPER=C LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=es_ES.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] sfit_0.3.0 aroma.light_1.30.5 matrixStats_0.8.14 [4] aroma.affymetrix_2.12.0 aroma.core_2.12.1 R.devices_2.8.2 [7] R.filesets_2.4.0 R.utils_1.29.8 R.oo_1.18.0 [10] affxparser_1.32.3 R.methodsS3_1.6.1 loaded via a namespace (and not attached): [1] aroma.apd_0.5.0 base64enc_0.1-1 digest_0.6.4 DNAcopy_1.34.0 [5] PSCBS_0.40.4 R.cache_0.9.0 R.huge_0.8.0 R.rsp_0.15.0 [9] splines_3.0.1 tools_3.0.1 Any comments are wellcome! Thanks a lot Best Juanjo El lunes, 14 de abril de 2014 23:51:20 UTC+2, Henrik Bengtsson escribió: > > Hi, > > agree, that certainly doesn't look correct - but there's probably a > simple explanation/fix. Before anything else, what version of PSCBS > are you running, i.e. what's your sessionInfo(). Also, exactly what > does you script look like, and if you have a problematic sample you > could share with me, that would help me reproduce this and help you. > > Cheers, > > Henrik > > On Mon, Apr 14, 2014 at 4:55 AM, Juan José Lozano Salvatella > <juanjo...@ciberehd.org <javascript:>> wrote: > > Hi > > > > I run the Vignette: Paired parent-specific copy-number segmentation > (Paired > > PSCBS) and we obtain some segments as the attached file. > > > > CNV segments are diffcult to explain. Could you explain this? > > > > Thanks a lot in advance > > > > Best > > > > Juanjo > > > > -- > > -- > > When reporting problems on aroma.affymetrix, make sure 1) to run the > latest > > version of the package, 2) to report the output of sessionInfo() and > > traceback(), and 3) to post a complete code example. > > > > > > You received this message because you are subscribed to the Google > Groups > > "aroma.affymetrix" group with website http://www.aroma-project.org/. > > To post to this group, send email to > > aroma-af...@googlegroups.com<javascript:> > > To unsubscribe and other options, go to > http://www.aroma-project.org/forum/ > > > > --- > > You received this message because you are subscribed to the Google > Groups > > "aroma.affymetrix" group. > > To unsubscribe from this group and stop receiving emails from it, send > an > > email to aroma-affymetr...@googlegroups.com <javascript:>. > > For more options, visit https://groups.google.com/d/optout. > -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.
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rLOH_CRC37.r
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