Hello, Is anyone else getting "PermGen space" memory errors after doing a lot of GUI clicking (e.g. creating biomaterials)? I've seen this a few times now (no particular click causes it as far as I can tell). Once it happens I have to restart tomcat.
Any ideas how I can help track down the problem (the stack trace doesn't look very useful)? Note that I built the binary package on a different machine (see 2. below). It looks like upgrading Java on the dev/build machine is a good idea (it is a few minor versions behind the production server). I don't think I've had this memory problem on the dev server, but I have also clicked around on it much less. cheers, Bob. 1. Copy-paste of error message: Version BASE 2.6.2pre (build #4204; schema #52) Web server Apache Tomcat/5.5.26 Database Server MySQL 5.0.51a Database Dialect org.hibernate.dialect.MySQLInnoDBDialect JDBC Driver com.mysql.jdbc.Driver (version 5.0) Java runtime Java(TM) SE Runtime Environment (1.6.0_04-b12), Sun Microsystems Inc. Operating system Linux amd64 2.6.18-53.1.4.el5 Memory Total: 751.4 MB Free: 670.5 MB Max: 910.3 MB Browser Mozilla/5.0 (Macintosh; U; Intel Mac OS X; en-US; rv:1.8.1.13) Gecko/20080311 Firefox/2.0.0.13 Error message PermGen space Stack trace java.lang.OutOfMemoryError ...at java.lang.ClassLoader.defineClass1(Native Method) ...at java.lang.ClassLoader.defineClass(ClassLoader.java:620) ...at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:124) ...at java.net.URLClassLoader.defineClass(URLClassLoader.java:260) ...at java.net.URLClassLoader.access$000(URLClassLoader.java:56) ...at java.net.URLClassLoader$1.run(URLClassLoader.java:195) ...at java.security.AccessController.doPrivileged(Native Method) ...at java.net.URLClassLoader.findClass(URLClassLoader.java:188) ...at org.apache.jasper.servlet.JasperLoader.loadClass(JasperLoader.java:131) ...at org.apache.jasper.servlet.JasperLoader.loadClass(JasperLoader.java:63) ...at org.apache.jasper.JspCompilationContext.load(JspCompilationContext.java:597) ...at org.apache.jasper.servlet.JspServletWrapper.getServlet(JspServletWrapper.java:137) ...at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:314) ...at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:329) ...at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:265) ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:803) ...at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:269) ...at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188) ...at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:679) ...at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:461) ...at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:399) ...at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:301) ...at org.apache.jasper.runtime.PageContextImpl.doForward(PageContextImpl.java:686) ...at org.apache.jasper.runtime.PageContextImpl.forward(PageContextImpl.java:656) ...at org.apache.jsp.views.hybridizations.index_jsp._jspService(index_jsp.java:375) ...at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:98) ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:803) ...at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:331) ...at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:329) ...at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:265) ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:803) ...at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:269) 2. system config of dev server (on which binary package was built) Version BASE 2.6.2pre (build #4204; schema #52) Web server Apache Tomcat/5.5.20 Database Server MySQL 5.0.21-max-log Database Dialect org.hibernate.dialect.MySQLInnoDBDialect JDBC Driver com.mysql.jdbc.Driver (version 5.0) Java runtime Java(TM) SE Runtime Environment (1.6.0-b105), Sun Microsystems Inc. Operating system Linux amd64 2.6.16.54-0.2.5-smp Memory Total: 108.4 MB Free: 22.6 MB Max: 910.3 MB -- Bob MacCallum | VectorBase Developer | Kafatos/Christophides Groups | Division of Cell and Molecular Biology | Imperial College London | Phone +442075941945 | Email [EMAIL PROTECTED] ------------------------------------------------------------------------- This SF.net email is sponsored by the 2008 JavaOne(SM) Conference Don't miss this year's exciting event. There's still time to save $100. Use priority code J8TL2D2. http://ad.doubleclick.net/clk;198757673;13503038;p?http://java.sun.com/javaone _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
