Hi, I have the same problem with changes I recently made in the devel branch of `derfinder`. The old vignettes were compiled the last time on November 4th and the new ones on November 12th. Maybe in the next 1-2 days (with the Wednesday nightly build) the old ones will be dropped.
Cheers, Leo On Tue, Nov 17, 2015 at 11:28 AM, Gabe Becker <becker.g...@gene.com> wrote: > Well, You shouldn't expect the release branches to change at all based on > anything you do on trunk. They never will. > > The release branch is (almost completely frozen), you shouldn't be making > changes there generally. Changes in documentation are a grey area, I > suppose, but I try to avoid those as well. Basically, once released the > package should be "as-is", and exactly the same for all people using it at > any point in that release cycle. > > I'm not sure why the vignettes are still there on the devel landing page if > you have in fact bumped the package version in svn though. That likely > comes down to exactly how those splash pages are generated, which I don't > know. > > Best, > ~G > > On Tue, Nov 17, 2015 at 8:23 AM, 顾祖光 <joker...@gmail.com> wrote: > >> Thanks for your reply! I have already updated the package (also with >> bumping version numbers) for many times but these old vignettes are still >> there. They even exist in the release branch: >> http://www.bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html >> >> >> On Tue, Nov 17, 2015 at 3:44 PM, Gabe Becker <becker.g...@gene.com> wrote: >> >>> Zuguang, >>> >>> From what I can see, you have not updated the version number of your >>> package, so I suspect you'll find that none of your changes have propogated >>> at all, though I can't entirely swear to that. >>> >>> I believe Bioc packages only update in the repo (which I assume is also >>> when the splash-pages are updated) upon version bump. >>> >>> ~G >>> >>> On Tue, Nov 17, 2015 at 4:35 AM, 顾祖光 <joker...@gmail.com> wrote: >>> >>>> Hi, >>>> >>>> I am developing a package called ComplexHeatmap and re-format the >>>> vignettes >>>> recently. I deleted the old vignettes and created several new vignettes. >>>> But when I look at the web page of the package ( >>>> http://bioconductor.org/packages/devel/bioc/html/ComplexHeatmap.html), >>>> the >>>> old vignette files (the bottom three vignettes) are still there but they >>>> are already removed in svn >>>> ( >>>> >>>> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap/vignettes/ >>>> ) >>>> >>>> I guess it may because some rules of svn but I am not experienced for >>>> this >>>> and I commit changes through github mirror. I want to remove the bottom >>>> three vignettes which start without numbers ("Making Complex Heatmap", >>>> and >>>> the two "Quick Examples of Making Complex Heatmaps"). Can anyone give >>>> some >>>> clue how to do this? >>>> >>>> Thanks! >>>> Zuguang >>>> >>>> [[alternative HTML version deleted]] >>>> >>>> _______________________________________________ >>>> Bioc-devel@r-project.org mailing list >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>>> >>> >>> >>> >>> -- >>> Gabriel Becker, Ph.D >>> Associate Scientist >>> Bioinformatics and Computational Biology >>> Genentech Research >>> >> >> > > > -- > Gabriel Becker, Ph.D > Associate Scientist > Bioinformatics and Computational Biology > Genentech Research > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
