That is great! Thank you! On Thu, Nov 19, 2015 at 5:22 PM, Brian Long <br...@bioconductor.org> wrote:
> All, > > Sorry about the slow reply. This should now be resolved, looking at : > > http://www.bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html > > http://www.bioconductor.org/packages/devel/bioc/html/ComplexHeatmap.html > > As you know, these pages are updated automatically, but a part of the > system that does that work was failing. Please let us know if you have > further issues & thanks for reporting. > > Thanks, > Brian > > On Tue, Nov 17, 2015 at 12:12 PM, Leonardo Collado Torres < > lcoll...@jhu.edu> > wrote: > > > Hi, > > > > I have the same problem with changes I recently made in the devel > > branch of `derfinder`. The old vignettes were compiled the last time > > on November 4th and the new ones on November 12th. Maybe in the next > > 1-2 days (with the Wednesday nightly build) the old ones will be > > dropped. > > > > Cheers, > > Leo > > > > > > On Tue, Nov 17, 2015 at 11:28 AM, Gabe Becker <becker.g...@gene.com> > > wrote: > > > Well, You shouldn't expect the release branches to change at all based > on > > > anything you do on trunk. They never will. > > > > > > The release branch is (almost completely frozen), you shouldn't be > making > > > changes there generally. Changes in documentation are a grey area, I > > > suppose, but I try to avoid those as well. Basically, once released the > > > package should be "as-is", and exactly the same for all people using it > > at > > > any point in that release cycle. > > > > > > I'm not sure why the vignettes are still there on the devel landing > page > > if > > > you have in fact bumped the package version in svn though. That likely > > > comes down to exactly how those splash pages are generated, which I > don't > > > know. > > > > > > Best, > > > ~G > > > > > > On Tue, Nov 17, 2015 at 8:23 AM, 顾祖光 <joker...@gmail.com> wrote: > > > > > >> Thanks for your reply! I have already updated the package (also with > > >> bumping version numbers) for many times but these old vignettes are > > still > > >> there. They even exist in the release branch: > > >> > > > http://www.bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html > > >> > > >> > > >> On Tue, Nov 17, 2015 at 3:44 PM, Gabe Becker <becker.g...@gene.com> > > wrote: > > >> > > >>> Zuguang, > > >>> > > >>> From what I can see, you have not updated the version number of your > > >>> package, so I suspect you'll find that none of your changes have > > propogated > > >>> at all, though I can't entirely swear to that. > > >>> > > >>> I believe Bioc packages only update in the repo (which I assume is > also > > >>> when the splash-pages are updated) upon version bump. > > >>> > > >>> ~G > > >>> > > >>> On Tue, Nov 17, 2015 at 4:35 AM, 顾祖光 <joker...@gmail.com> wrote: > > >>> > > >>>> Hi, > > >>>> > > >>>> I am developing a package called ComplexHeatmap and re-format the > > >>>> vignettes > > >>>> recently. I deleted the old vignettes and created several new > > vignettes. > > >>>> But when I look at the web page of the package ( > > >>>> > http://bioconductor.org/packages/devel/bioc/html/ComplexHeatmap.html > > ), > > >>>> the > > >>>> old vignette files (the bottom three vignettes) are still there but > > they > > >>>> are already removed in svn > > >>>> ( > > >>>> > > >>>> > > > https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap/vignettes/ > > >>>> ) > > >>>> > > >>>> I guess it may because some rules of svn but I am not experienced > for > > >>>> this > > >>>> and I commit changes through github mirror. I want to remove the > > bottom > > >>>> three vignettes which start without numbers ("Making Complex > Heatmap", > > >>>> and > > >>>> the two "Quick Examples of Making Complex Heatmaps"). Can anyone > give > > >>>> some > > >>>> clue how to do this? > > >>>> > > >>>> Thanks! > > >>>> Zuguang > > >>>> > > >>>> [[alternative HTML version deleted]] > > >>>> > > >>>> _______________________________________________ > > >>>> Bioc-devel@r-project.org mailing list > > >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel > > >>>> > > >>> > > >>> > > >>> > > >>> -- > > >>> Gabriel Becker, Ph.D > > >>> Associate Scientist > > >>> Bioinformatics and Computational Biology > > >>> Genentech Research > > >>> > > >> > > >> > > > > > > > > > -- > > > Gabriel Becker, Ph.D > > > Associate Scientist > > > Bioinformatics and Computational Biology > > > Genentech Research > > > > > > [[alternative HTML version deleted]] > > > > > > _______________________________________________ > > > Bioc-devel@r-project.org mailing list > > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
