All, Sorry about the slow reply. This should now be resolved, looking at :
http://www.bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html http://www.bioconductor.org/packages/devel/bioc/html/ComplexHeatmap.html As you know, these pages are updated automatically, but a part of the system that does that work was failing. Please let us know if you have further issues & thanks for reporting. Thanks, Brian On Tue, Nov 17, 2015 at 12:12 PM, Leonardo Collado Torres <lcoll...@jhu.edu> wrote: > Hi, > > I have the same problem with changes I recently made in the devel > branch of `derfinder`. The old vignettes were compiled the last time > on November 4th and the new ones on November 12th. Maybe in the next > 1-2 days (with the Wednesday nightly build) the old ones will be > dropped. > > Cheers, > Leo > > > On Tue, Nov 17, 2015 at 11:28 AM, Gabe Becker <becker.g...@gene.com> > wrote: > > Well, You shouldn't expect the release branches to change at all based on > > anything you do on trunk. They never will. > > > > The release branch is (almost completely frozen), you shouldn't be making > > changes there generally. Changes in documentation are a grey area, I > > suppose, but I try to avoid those as well. Basically, once released the > > package should be "as-is", and exactly the same for all people using it > at > > any point in that release cycle. > > > > I'm not sure why the vignettes are still there on the devel landing page > if > > you have in fact bumped the package version in svn though. That likely > > comes down to exactly how those splash pages are generated, which I don't > > know. > > > > Best, > > ~G > > > > On Tue, Nov 17, 2015 at 8:23 AM, 顾祖光 <joker...@gmail.com> wrote: > > > >> Thanks for your reply! I have already updated the package (also with > >> bumping version numbers) for many times but these old vignettes are > still > >> there. They even exist in the release branch: > >> > http://www.bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html > >> > >> > >> On Tue, Nov 17, 2015 at 3:44 PM, Gabe Becker <becker.g...@gene.com> > wrote: > >> > >>> Zuguang, > >>> > >>> From what I can see, you have not updated the version number of your > >>> package, so I suspect you'll find that none of your changes have > propogated > >>> at all, though I can't entirely swear to that. > >>> > >>> I believe Bioc packages only update in the repo (which I assume is also > >>> when the splash-pages are updated) upon version bump. > >>> > >>> ~G > >>> > >>> On Tue, Nov 17, 2015 at 4:35 AM, 顾祖光 <joker...@gmail.com> wrote: > >>> > >>>> Hi, > >>>> > >>>> I am developing a package called ComplexHeatmap and re-format the > >>>> vignettes > >>>> recently. I deleted the old vignettes and created several new > vignettes. > >>>> But when I look at the web page of the package ( > >>>> http://bioconductor.org/packages/devel/bioc/html/ComplexHeatmap.html > ), > >>>> the > >>>> old vignette files (the bottom three vignettes) are still there but > they > >>>> are already removed in svn > >>>> ( > >>>> > >>>> > https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap/vignettes/ > >>>> ) > >>>> > >>>> I guess it may because some rules of svn but I am not experienced for > >>>> this > >>>> and I commit changes through github mirror. I want to remove the > bottom > >>>> three vignettes which start without numbers ("Making Complex Heatmap", > >>>> and > >>>> the two "Quick Examples of Making Complex Heatmaps"). Can anyone give > >>>> some > >>>> clue how to do this? > >>>> > >>>> Thanks! > >>>> Zuguang > >>>> > >>>> [[alternative HTML version deleted]] > >>>> > >>>> _______________________________________________ > >>>> Bioc-devel@r-project.org mailing list > >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel > >>>> > >>> > >>> > >>> > >>> -- > >>> Gabriel Becker, Ph.D > >>> Associate Scientist > >>> Bioinformatics and Computational Biology > >>> Genentech Research > >>> > >> > >> > > > > > > -- > > Gabriel Becker, Ph.D > > Associate Scientist > > Bioinformatics and Computational Biology > > Genentech Research > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
