Hi Ge, Thank you for your email, and thank you, Charles, for bringing it to our attention. Since CNEr was originally developed in the Lenhard group, and the members of the Lenhard group, as well as mine, use it regularly, in consultation with Boris Lenhard (cc'd), we decided it would be beneficial for both the Lenhard group and mine to continue maintaining and developing it further.
Can Boris and I be maintainers for now, so we can promptly react when needed, until we discuss who will take the active maintenance role in the following weeks? Thank you in advance. Kind regards, Damir Baranasic On Wed, 25 Jun 2025 at 21:43, Ge Tan <ge_...@live.com> wrote: > Dear all, > > Sorry not monitoring this email for some time. I no longer have the time > to maintain the CNEr package and would like to deprecate it unless there is > some volunteer to keep maintaining it. > > Thanks, > Ge > > From: Lori Shepherd <shepherd.b...@gmail.com> > Date: Monday, 23 June 2025 at 13:05 > To: Charles Plessy <charles.ple...@oist.jp> > Cc: bioc-devel@r-project.org <bioc-devel@r-project.org>, Ge Tan < > ge_...@live.com>, g...@me.com <g...@me.com> > Subject: Re: [Bioc-devel] CNEr fails to build; patch available. > > We hope that the maintainer is still active and willing to maintain their > package; Bioconductor admin will not push for a maintainer to ensure all > packages are actively maintained. If we do not hear from the maintainer or > have an explicit request to deprecate the package from them, we can have > someone in the community volunteer to maintain the package consistent with > Bioconductors end of life policy and package naming policy that maintainers > agree to on submission; but that is only if the current maintainer does not > respond and most ideally with the current maintainers permission. Let us > see if Ge Tan responds shortly. > > > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > > On Sun, Jun 22, 2025 at 9:22 PM Charles Plessy <charles.ple...@oist.jp > <mailto:charles.ple...@oist.jp>> wrote: > Hi Ge and Bioc admins, > > CNEr fails to build with recent GCC, preventing the installation of its > dependency chain. > > https://github.com/ge11232002/CNEr/issues/28 > > A patch is available from NixOS. It looks sane to me. > > > > https://patch-diff.githubusercontent.com/raw/NixOS/nixpkgs/pull/411384.patch > > Can Ge or an admin push it? > > Have a nice day, > > Charles > > -- > Charles Plessy - - ~ ~ ~ ~ ~ ~~~~ ~ ~ ~ ~ ~ - - charles.ple...@oist.jp > <mailto:charles.ple...@oist.jp> > Okinawa Institute of Science and Technology Graduate University > Senior staff scientist ~~ Luscombe Unit ~~ https://groups.oist.jp/grsu > Toots from work - ~~ ~~~~ ~~ - https://fediscience.org/@charles_plessy > > _______________________________________________ > Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- Damir Baranasic [image: twitter icon download 16x16 - curved] https://twitter.com/CroBeaver [image: linkedin icon download 16x16 - curved] https://www.linkedin.com/in/damir-barana%C5%A1i%C4%87-05566b17/ [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
