This is clumsy but it would get yor answer
pdbset xyzin *.pdb
SEQU PDB
end
This gives a SEQRES format for those residues which have coordinates.
You would then have to compare the one in the header with these records
to find gaps
Eleanor
Ibrahim M. Moustafa wrote:
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Hi bb,
I wonder if there is a program, server, script that can analyze the
pdb file to enlist the missing residues (for the case in my hand,
REMARK 465 is absent from the pdb file while the structure is full of
gaps!).
I looked in utility programs like moleman2, pdbset, and tried to
google but couldn't find a suitable tool.
thanks,
Ibrahim
Ibrahim M.Moustafa, Ph.D.
Pennsylvania State University
Biochemistry & Molecular Biology Dept.
201 Althouse Lab.
University Park, PA16802
Tel (814) 863 8703
Fax (814) 865 7927
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