How about overlapmap in ccp4?
Thanks
Abhinav
Stanford Synchrotron Radiation Lightsource
Joint Center for Structural Genomics
Mail Stop 99
Phone: (650) 926-2992
Fax: (650) 926-3292
Vellieux Frederic wrote:
Dear all,
I am writing because I have a question that concerns coot or ccp4
(don't know which one). I have 2 maps and one model. One of the map is
an experimental map that has not seen one inch of a model, the second
map is generated after refinement of a molecular replacement model.
Same molecule, obviously. They both look good. I am trying to find out
which of the 2 maps is the most informative. Hence I wish to compute a
global (real space) correlation coefficient "a la Alwyn Jones". In
fact 2 sets of numbers per map : an average real space correlation
coefficient, and a residue-per-residue correlation coefficient. The
average real space correlation coefficient I can easily compute if I
have the residue-by-residue real space correlation coefficients by
writing a small jiffy program. I'm sure that someone must have done
this. I suppose I could use CNS, but it's a bit tedious with having to
generate the mtf file... Hence I am looking for something simpler. I
did not see anything in the Phenix GUI.
Any way of doing what I want in coot? Or in ccp4i?
Thanks,
Fred.
