Hi Victor,
Thanks for recommending ALINE.
It is not exactly true that development has stopped. It is just
glacially slow as funding for such utilities is not easily obtained!
Recommendations for improvements (to improve that potential) are
well-received and a keen user can write their own plug-ins to achieve
new functionality.
Cheers,
Charlie
Victor Alves wrote:
Hi Mohd
You can also check: ALINE (An Extensible WYSIWYG Protein Sequence
Alignment Editor for Publication Quality Figures)
http://crystal.bcs.uwa.edu.au/px/charlie/software/aline/
It’s quite nice and has a lot of potential, although unfortunately it
seems that development of the software as stopped :-(
Cheers
Victor Alves
*From:* CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk] *On Behalf Of
*Salameh, Mohd A., Ph.D.
*Sent:* sexta-feira, 21 de Maio de 2010 16:11
*To:* CCP4BB@JISCMAIL.AC.UK
*Subject:* [ccp4bb] Alignment software
Dear All,
I’m trying to prepare an alignment figure of 2 proteins that highlight
conserved and similar residues and probably secondary structures; I will
greatly appreciate it if anybody can recommend a software that I can
use. Thanks, Mohd
--
Charlie Bond
Professorial Fellow
University of Western Australia
School of Biomedical, Biomolecular and Chemical Sciences
M310
35 Stirling Highway
Crawley WA 6009
Australia
charles.b...@uwa.edu.au
+61 8 6488 4406
