Hi Charlie
I am so sorry I assumed development had halted, but I'm glad one of the
authors of ALINE has stepped in to restore the truth, and even more that
ALINE is still being taken care of.
Hopefully those needed funds will materialize, for your sake and also for
the benefit of all the scientific community.
I will e-mail you some suggestions.
Cheers,
Victor Alves
______________________________
VICTOR DIOGO ALVES, DVM PhD
Professor Auxiliar
Faculdade de Medicina Veterinária
UTL - Lisboa
__________________________
-----Original Message-----
From: CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk] On Behalf Of
Charlie Bond
Sent: terça-feira, 25 de Maio de 2010 4:48
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Alignment software
Hi Victor,
Thanks for recommending ALINE.
It is not exactly true that development has stopped. It is just
glacially slow as funding for such utilities is not easily obtained!
Recommendations for improvements (to improve that potential) are
well-received and a keen user can write their own plug-ins to achieve
new functionality.
Cheers,
Charlie
Victor Alves wrote:
> Hi Mohd
>
>
>
> You can also check: ALINE (An Extensible WYSIWYG Protein Sequence
> Alignment Editor for Publication Quality Figures)
>
>
>
> http://crystal.bcs.uwa.edu.au/px/charlie/software/aline/
>
>
>
> Its quite nice and has a lot of potential, although unfortunately it
> seems that development of the software as stopped :-(
>
>
>
> Cheers
>
>
>
> Victor Alves
>
>
>
>
>
>
>
> *From:* CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk] *On Behalf Of
> *Salameh, Mohd A., Ph.D.
> *Sent:* sexta-feira, 21 de Maio de 2010 16:11
> *To:* CCP4BB@JISCMAIL.AC.UK
> *Subject:* [ccp4bb] Alignment software
>
>
>
> Dear All,
>
> Im trying to prepare an alignment figure of 2 proteins that highlight
> conserved and similar residues and probably secondary structures; I will
> greatly appreciate it if anybody can recommend a software that I can
> use. Thanks, Mohd
>
--
Charlie Bond
Professorial Fellow
University of Western Australia
School of Biomedical, Biomolecular and Chemical Sciences
M310
35 Stirling Highway
Crawley WA 6009
Australia
charles.b...@uwa.edu.au
+61 8 6488 4406
