Hy Mohd, There was recently a nice review about all the alignment software available. You might find one you like in there.
Visualization of multiple alignments, phylogenies and gene family evolution. http://www.nature.com/nmeth/journal/v7/n3s/abs/nmeth.1434.html By the way there's also a review on structures visualization software in the same supplement issue about visualizing biological data, that might interest other readers form that list as well. Visualization of macromolecular structures. http://www.nature.com/nmeth/journal/v7/n3s/abs/nmeth.1427.html Best, Luc -- Luc Bonnefond, PhD. Division of Structure Biology Department of Basic Medical Sciences, Institute of Medical Science, The University of Tokyo bonne...@ims.u-tokyo.ac.jp l.bonnef...@gmail.com
