ESCET is also very useful to reveal small, but significant differences. It also identifies conformationally invariant regions for superposition.
http://schneider.group.ifom-ieo-campus.it/escet/index.html Gergely On Thu, Apr 14, 2011 at 9:34 AM, Tim Gruene <t...@shelx.uni-ac.gwdg.de> wrote: > Hello Rex, > > most programs probably use similar algorithms for superpositions, so you can > pick your choice: > - O > - lsqman > - lsqkab > - coot > - ... > are all similarily comfortable to use in my opinion. > > Tim > > On Wed, Apr 13, 2011 at 09:18:27PM +0100, REX PALMER wrote: >> Dear All >> What is the best program to use for comparing two protein structures which >> are very similar both structurally and wrt aa sequence? ie to get the rms >> deviations both generally and in selected regions. >> >> Rex Palmer >> Birkbeck College > > -- > -- > Tim Gruene > Institut fuer anorganische Chemie > Tammannstr. 4 > D-37077 Goettingen > > phone: +49 (0)551 39 22149 > > GPG Key ID = A46BEE1A > > > -----BEGIN PGP SIGNATURE----- > Version: GnuPG v1.4.10 (GNU/Linux) > > iD8DBQFNpqOSUxlJ7aRr7hoRAuLIAJ0Tf�㤛聬틢谋擄ਏ� > x3TuOjPcJqLZgL1vnANuUV0= > =vQE1 > -----END PGP SIGNATURE----- > > -- Gergely Katona, PhD associate professor, docent Department of Chemistry, University of Gothenburg Box 462, 40530 Göteborg, Sweden Tel: +46-31-786-3959 / M: +46-70-716-7586 / Fax: +46-31-786-3910 Web: http://www.csb.gu.se/katona, Email: gergely.kat...@chem.gu.se
