On 04/13/2011 09:18 PM, REX PALMER wrote:
Dear All
What is the best program to use for comparing two protein structures which are
very similar both structurally and wrt aa sequence? ie to get the rms
deviations both generally and in selected regions.
Rex Palmer
Birkbeck College
Using CCP4 go to the coordinate utility
Superpose molecules
You can either compare things using secondary structure or by specifying
residue spans
Underlying programs are PISA (also available at the BI msd server) and
LSQKAB
Eleanor
