Hi, PDBsum (http://www.ebi.ac.uk/pdbsum/) can also analyze and make a summary of interactions between partners of a protein-protein complex. Just submit your pdb by clicking the 'generate' option from the left menu on the main page.
Best, Gulcin Gulten, Ph.D. On Tue, Mar 10, 2015 at 11:57 AM, gert <gerrit.vri...@radboudumc.nl> wrote: > Dear Debasish, > > The WHAT IF software can do some things for you. As you probably don't > want to install a thirty year old package just for some inter-chain > contacts, I added a server for you to the WHAT IF servers that are > available at http://swift.cmbi.ru.nl/ look under contacts, it is the > bottom server on that page. > > Greetings > Gert > >> Dear All, >> >> Apologies for this little off-topic inquiry. I want to closely >> visualize the interacting residues in an multimeric protein complex to >> understand the nature of interactions. Is there any good software to >> give this information with good clarity. >> Any suggestion is highly appreciated. >> >> Thanks, >> Best !!! >> >> Debasish Kumar Ghosh >> >> > Het Radboudumc staat geregistreerd bij de Kamer van Koophandel in het > handelsregister onder nummer 41055629. > The Radboud university medical center is listed in the Commercial Register > of the Chamber of Commerce under file number 41055629. > -- Post-Doctoral Research Associate Texas A&M University Dept. of Biochemistry and Biophysics Interdisciplinary Life Sciences Building 301 Old Main Drive, Lab 2138 College Station, Texas 77843
