Thanks Eleanor, yes, I looked at that table and tried to find out the Rfree and R, I know the 4SSQ/LL means column means resolution bins but I did not know what column means Rfac (The Rf_free means Rfree I guess).
On Thu, Dec 7, 2017 at 2:58 AM, Eleanor Dodson < 0000176a9d5ebad7-dmarc-requ...@jiscmail.ac.uk> wrote: > Dont you look at the graphs from the log file? > > This table gives you all sorts of information including R and Rfree in > resolution shells.. > > Eleanor > **** Things for loggraph, R factor and > others **** > > > $TABLE: Cycle 11. Rfactor analysis, F distribution v resln : > $GRAPHS:Cycle 11. <Rfactor> v. resln :N:1,6,7,11,12: > :Cycle 11. <Fobs> and <Fc> v. resln :N:1,4,5,9,10: > :Cycle 11. % observed v. resln :N:1,3: > $$ > M(4SSQ/LL) NR_used %_obs M(Fo_used) M(Fc_used) Rf_used WR_used > NR_free M(Fo_free) M(Fc_free) Rf_free WR_free $$ > $$ > 0.008 1365 96.51 726.5 585.6 0.51 0.55 72 686.2 539.4 > 0.59 0.62 > 0.023 2411 98.00 498.1 446.2 0.54 0.56 131 489.5 412.9 > 0.57 0.58 > 0.037 3086 97.10 536.9 429.7 0.55 0.56 164 563.6 431.4 > 0.57 0.57 > 0.052 3605 96.71 600.3 450.7 0.55 0.55 211 595.3 455.8 > 0.59 0.59 > 0.067 4075 96.11 516.0 355.9 0.56 0.56 199 552.2 354.8 > 0.55 0.54 > 0.082 4558 97.20 425.2 288.7 0.56 0.55 228 425.1 304.8 > 0.57 0.54 > 0.096 5010 97.84 322.6 230.4 0.55 0.53 256 320.5 229.6 > 0.60 0.58 > 0.111 5376 98.91 252.1 193.5 0.55 0.53 273 256.8 195.7 > 0.52 0.50 > 0.126 5727 99.11 213.0 170.2 0.53 0.51 289 209.4 170.1 > 0.59 0.56 > 0.141 6121 99.21 174.5 142.0 0.54 0.52 307 171.1 144.9 > 0.61 0.57 > 0.155 6381 99.31 144.9 122.6 0.47 0.45 341 136.1 115.1 > 0.57 0.53 > 0.170 6677 99.12 129.9 107.6 0.55 0.52 339 129.5 110.5 > 0.60 0.58 > 0.185 6963 99.12 116.6 93.8 0.55 0.53 390 113.4 96.3 > 0.54 0.53 > 0.199 7194 99.09 100.7 79.4 0.55 0.54 405 106.4 84.0 > 0.55 0.53 > 0.214 7427 99.18 87.6 70.9 0.53 0.52 400 88.9 71.3 > 0.53 0.52 > 0.229 7702 98.68 77.3 61.2 0.52 0.52 395 80.2 61.7 > 0.54 0.53 > 0.244 7963 98.92 65.6 52.3 0.48 0.48 428 65.5 53.7 > 0.54 0.54 > 0.258 8198 98.48 56.8 44.6 0.46 0.46 437 53.5 43.6 > 0.49 0.49 > 0.273 8375 98.66 47.7 37.5 0.43 0.43 428 48.0 37.6 > 0.47 0.48 > 0.288 8611 98.24 40.9 32.1 0.42 0.42 450 41.8 32.1 > 0.50 0.50 > $$ > > > > On 7 December 2017 at 01:07, Bernhard Rupp <hofkristall...@gmail.com> > wrote: > >> You can find these numbers in the header of the output model coordinate >> file. >> >> >> >> BR >> >> >> >> *From:* CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] *On Behalf Of >> *Xiao Lei >> *Sent:* Wednesday, December 6, 2017 2:40 PM >> *To:* CCP4BB@JISCMAIL.AC.UK >> *Subject:* [ccp4bb] How to find the Rfree and R in the highest >> resolution bin in Refmac 5? >> >> >> >> Dear All, >> >> I am asking how to find the Rfree and R in the highest resolution bin in >> Refmac 5 output? >> >> I used Refmac5 in refinement of protein structure at 3A resolution. >> Output of Refmac5 gives Rfee and R as: >> >> Initial Final >> >> R factor 0.2900 0.2052 >> >> R free 0.3015 0.2639 >> >> >> I'd also like to see the Rfree and R in the highest resolution bin. I >> checked log file in Refmac5 and found M(4SSQ/LL) resolution range table >> with columns of Rf_free and WR_free, I searched in internet and still could >> not understand the Rf_free and WR_free label meaning. I'd like to find >> something like Rfree XXX (XXX); R XXX (XXX) (the highest resolution bin >> value in the parenthesis). >> >> >> >> thanks ahead. >> >> >> >> >> > >
