Hi Stuart, If the wait til Python3 is the issue, surely we are close to pushing the trigger ? Are we confident that other things (like fortran libraries and ad-hos python and shell scripts) are good to go ?
M. Sent from my iPad On 18 Nov 2020, at 10:13, Stuart McNicholas <stuart.mcnicho...@york.ac.uk> wrote: Possibly. But i2 itself cannot be fully international until Python3, since sqlite in Python2 does not support unicode. Unless we drop sqlite, of course, but there will be other libraries that cause problems. On Wed, 18 Nov 2020 at 09:44, Martin Noble <martin.no...@newcastle.ac.uk<mailto:martin.no...@newcastle.ac.uk>> wrote: Thanks Stuart, Of course, since we ar enow in teh 21st Century, maybe we should make these problems go away, if necessaryby dropping those elements of the suite that can’t handle international, modeern scientists ? Sent from my iPad On 18 Nov 2020, at 09:20, Stuart McNicholas <stuart.mcnicho...@york.ac.uk<mailto:stuart.mcnicho...@york.ac.uk>> wrote: Yes, Martin, we should. I think we're catching and warning about non-ASCII now. I'll check if whitespace is in the check as well, and if not add it. On Wed, 18 Nov 2020 at 09:12, Martin Noble <martin.no...@newcastle.ac.uk<mailto:martin.no...@newcastle.ac.uk>> wrote: Should be caught in ccp4.setup-sh ? Or in ccp4i2 launch binary ? Sent from my iPad On 17 Nov 2020, at 13:13, Stuart McNicholas <000019a0c5f649e5-dmarc-requ...@jiscmail.ac.uk<mailto:000019a0c5f649e5-dmarc-requ...@jiscmail.ac.uk>> wrote: ⚠ External sender. Take care when opening links or attachments. Do not provide your login details. Dear Kevin, Glad you worked it out. Sorry I missed earlier messages. This is another common Windows problem - not just spaces either, but anything not ASCII alphanumeric is likely to cause problems. Stuart On Tue, 17 Nov 2020 at 12:54, Kevin Cowtan <00002ba34e97fcaf-dmarc-requ...@jiscmail.ac.uk<mailto:00002ba34e97fcaf-dmarc-requ...@jiscmail.ac.uk>> wrote: Hi all The problem turned out to be that the user had a space in their username. Creating a new account solved it. Regards, On Tue, 17 Nov 2020 at 10:23, Kevin Cowtan <kevin.cow...@york.ac.uk<mailto:kevin.cow...@york.ac.uk>> wrote: Hi! I have a student trying to run i2, and a task to import merged data from cif which works fine for the other students is failing at the pointless step. The logfiles are identical up to pointless (apart from the random free-R flag assignment), but the problem occurs in pointless. The log file output is as follows: ==== Input command lines ==== # Task 4.3.1 pointless running pointless # Mini-MTZ input to HKLIN: # Data type parameter job annotation NAME PROJECT 2b463 CRYSTAL xtal DATASET dest HKLIN C:\Users\xxx\CCP4I2_PROJECTS\2b463\CCP4_JOBS\job_4\4_2b463_obsout_import_merged.mtz HKLOUT C:\Users\xxx\CCP4I2_PROJECTS\2b463\CCP4_JOBS\job_4\job_3\job_1\MTZUNMERGEDOUT.mtz choose spacegroup P 61 ==== End of input ==== ****************************************************** * * * POINTLESS * * 1.12.2 * * * * Determine Laue group from unmerged intensities * * Phil Evans MRC LMB, Cambridge * * Uses cctbx routines by Ralf Grosse-Kunstleve et al.* * * ****************************************************** **** ERROR **** $TEXT:Reference: $$ Please cite $$ P.R.Evans, 'Scaling and assessment of data quality' Acta Cryst. D62, 72-82 (2006). <a href="http://journals.iucr.org/d/issues/2006/01/00/ba5084/index.html";> <b>PDF</b></a> P.R.Evans, 'An introduction to data reduction: space-group determination, scaling and intensity statistics' Acta Cryst. D67, 282-292 (2011) <a href="http://journals.iucr.org/d/issues/2011/04/00/ba5158/index.html";> <b>PDF</b></a> $$ -- Professor Kevin Cowtan Email: kevin.cow...@york.ac.uk<mailto:kevin.cow...@york.ac.uk> Pronouns: Please use he/him or they/them when referring to me in professional contexts Address: York Structural Biology Laboratory, Department of Chemistry University of York, York, YO10 5DD, UK ORCiD: 0000-0002-0189-1437<https://orcid.org/0000-0002-0189-1437> Web: https://www.york.ac.uk/chemistry/staff/academic/a-c/kcowtan/ Disclaimer: http://w<http://www.york.ac.uk/docs/disclaimer/email.htm>ww.york.ac.uk/docs/disclaimer/email.htm<http://www.york.ac.uk/docs/disclaimer/email.htm> -- Professor Kevin Cowtan Email: kevin.cow...@york.ac.uk<mailto:kevin.cow...@york.ac.uk> Pronouns: Please use he/him or they/them when referring to me in professional contexts Address: York Structural Biology Laboratory, Department of Chemistry University of York, York, YO10 5DD, UK ORCiD: 0000-0002-0189-1437<https://orcid.org/0000-0002-0189-1437> Web: https://www.york.ac.uk/chemistry/staff/academic/a-c/kcowtan/ Disclaimer: http://w<http://www.york.ac.uk/docs/disclaimer/email.htm>ww.york.ac.uk/docs/disclaimer/email.htm<http://www.york.ac.uk/docs/disclaimer/email.htm> ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
