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On Thu, Aug 20, 2009 at 5:46 PM, Stefan Kuhn<[email protected]> wrote:
> does cdk have a possibility to model atom valences? Can e.g. a Nitrogen be
> declared to be of valence X?

What atomic property are you particularly interested in?

The CDK atom typing environment separates the valency into the
involvement of those valencies... For example, N has valency five, but
has two electrons involved in a lone pair.

The CDK atom types define instead number of neighbors, number of
double bond equivalents and number of lone pairs (on top of formal
charge).

Egon

-- 
Post-doc @ Uppsala University
http://chem-bla-ics.blogspot.com/

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