bvaradar commented on a change in pull request #600:  Timeline Service with 
Incremental View Syncing support
URL: https://github.com/apache/incubator-hudi/pull/600#discussion_r275560779
 
 

 ##########
 File path: 
hoodie-client/src/main/java/com/uber/hoodie/io/HoodieCleanHelper.java
 ##########
 @@ -86,32 +86,38 @@ public HoodieCleanHelper(HoodieTable<T> hoodieTable, 
HoodieWriteConfig config) {
 
     for (HoodieFileGroup fileGroup : fileGroups) {
       int keepVersions = config.getCleanerFileVersionsRetained();
-      Iterator<FileSlice> fileSliceIterator = 
fileGroup.getAllFileSlices().iterator();
+      Iterator<FileSlice> fileSliceIterator = fileGroup.getAllFileSlices()
+          .filter(fs -> !isFileSliceNeededForPendingCompaction(fs)).iterator();
+      if (isFileGroupInPendingCompaction(fileGroup)) {
+        // We have already saved the last version of file-groups for pending 
compaction Id
+        keepVersions--;
+      }
+
       while (fileSliceIterator.hasNext() && keepVersions > 0) {
         // Skip this most recent version
         FileSlice nextSlice = fileSliceIterator.next();
         Optional<HoodieDataFile> dataFile = nextSlice.getDataFile();
         if (dataFile.isPresent() && 
savepointedFiles.contains(dataFile.get().getFileName())) {
-          // do not clean up a savepoint data file
+          // do not clean up a savepoint data file or one required for pending 
compaction
 
 Review comment:
   Moved the comment to line 90

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