Kevin Cowtan wrote:
Coot reads files with duplicate atom numbers
just fine (at least 0.6pre-latest does).
However Coot will ignore any lines beginning
ATOM 1?????
ATOM 2?????
etc
because those are not valid atom records. So that is the reason these
are being ignored.
Yes, we should say that this is handled by the mmdb library from Eugene
Krissinel.
The original poster could have expedited the analysis somewhat by
quoting the console log which should have reproduced the problematic
lines and line numbers.
Paul.
(p.s. back now, less out of touch)
