FWIW, I am seeing all these warning messages using coot v1.1.19 (got
nowhere with trying to install from HEAD)
```
WARNING:: validation failed: texture-meshes.shader validation status 0
Shader compile texture-meshes.shader validation-failed
WARNING:: validation failed: outline-of-active-residue.shader
validation status 0
Shader compile outline-of-active-residue.shader validation-failed
WARNING:: validation failed: map.shader validation status 0
Shader compile map.shader validation-failed
WARNING:: validation failed: draw-map-cap.shader validation status 0
Shader compile draw-map-cap.shader validation-failed
WARNING:: validation failed: model.shader validation status 0
Shader compile model.shader validation-failed
WARNING:: validation failed: central-cube.shader validation status 0
Shader compile central-cube.shader validation-failed
WARNING:: validation failed: central-cube.shader validation status 0
Shader compile central-cube.shader validation-failed
WARNING:: validation failed: hud-text.shader validation status 0
Shader compile hud-text.shader validation-failed
WARNING:: validation failed: hud-bars.shader validation status 0
Shader compile hud-bars.shader validation-failed
WARNING:: validation failed: hud-labels.shader validation status 0
Shader compile hud-labels.shader validation-failed
WARNING:: validation failed: hud-image-texture.shader validation status 0
Shader compile hud-image-texture.shader validation-failed
WARNING:: validation failed: atom-label.shader validation status 0
Shader compile atom-label.shader validation-failed
WARNING:: validation failed: moleculestotriangles.shader validation status 0
Shader compile moleculestotriangles.shader validation-failed
WARNING:: validation failed: lines.shader validation status 0
Shader compile lines.shader validation-failed
WARNING:: validation failed: lines-pulse.shader validation status 0
Shader compile lines-pulse.shader validation-failed
WARNING:: validation failed: rama-balls.shader validation status 0
Shader compile rama-balls.shader validation-failed
WARNING:: validation failed: particles.shader validation status 0
Shader compile particles.shader validation-failed
WARNING:: validation failed: instanced-objects.shader validation status 0
Shader compile instanced-objects.shader validation-failed
WARNING:: validation failed: extra-distance-restraints.shader
validation status 0
Shader compile extra-distance-restraints.shader validation-failed
WARNING:: validation failed: hud-geometry-tooltip-text.shader
validation status 0
Shader compile hud-geometry-tooltip-text.shader validation-failed
WARNING:: validation failed: residue-markers.shader validation status 0
Shader compile residue-markers.shader validation-failed
WARNING:: validation failed: ligand-view.shader validation status 0
Shader compile ligand-view.shader validation-failed
WARNING:: validation failed: model-as-mesh.shader validation status 0
Shader compile model-as-mesh.shader validation-failed
WARNING:: validation failed: symmetry-atoms-lines.shader validation status 0
Shader compile symmetry-atoms-lines.shader validation-failed
WARNING:: validation failed: hud-bars.shader validation status 0
Shader compile hud-bars.shader validation-failed
WARNING:: validation failed: rama-plot-axes-and-ticks.shader validation status 0
Shader compile rama-plot-axes-and-ticks.shader validation-failed
WARNING:: validation failed: rama-plot-phi-psi-markers.shader
validation status 0
Shader compile rama-plot-phi-psi-markers.shader validation-failed
WARNING:: validation failed: hud-lines.shader validation status 0
Shader compile hud-lines.shader validation-failed
WARNING:: validation failed: background-image.shader validation status 0
Shader compile background-image.shader validation-failed
WARNING:: validation failed: meshes.shader validation status 0
Shader compile meshes.shader validation-failed
WARNING:: validation failed: texture-meshes.shader validation status 0
Shader compile texture-meshes.shader validation-failed
WARNING:: validation failed: residue-markers-for-ssao.shader validation status 0
Shader compile residue-markers-for-ssao.shader validation-failed
WARNING:: validation failed: meshes-with-shadows.shader validation status 0
Shader compile meshes-with-shadows.shader validation-failed
WARNING:: validation failed: meshes-for-shadow-map.shader validation status 0
Shader compile meshes-for-shadow-map.shader validation-failed
WARNING:: validation failed: instanced-meshes-for-shadow-map.shader
validation status 0
Shader compile instanced-meshes-for-shadow-map.shader validation-failed
WARNING:: validation failed: meshes-for-ssao.shader validation status 0
Shader compile meshes-for-ssao.shader validation-failed
WARNING:: validation failed: instanced-meshes-for-ssao.shader
validation status 0
Shader compile instanced-meshes-for-ssao.shader validation-failed
WARNING:: validation failed: texture-meshes-for-ssao.shader validation status 0
Shader compile texture-meshes-for-ssao.shader validation-failed
WARNING:: validation failed: texture-meshes-with-shadows.shader
validation status 0
Shader compile texture-meshes-with-shadows.shader validation-failed
WARNING:: validation failed: texture-meshes-shadow-map.shader
validation status 0
Shader compile texture-meshes-shadow-map.shader validation-failed
WARNING:: validation failed: shadow-map-image-texture.shader validation status 0
Shader compile shadow-map-image-texture.shader validation-failed
WARNING:: validation failed: 9.ssao_geometry.shader validation status 0
Shader compile 9.ssao_geometry.shader validation-failed
WARNING:: validation failed: 9.ssao.shader validation status 0
Shader compile 9.ssao.shader validation-failed
WARNING:: validation failed: 9.ssao_blur.shader validation status 0
Shader compile 9.ssao_blur.shader validation-failed
WARNING:: validation failed: instanced-meshes-with-shadows.shader
validation status 0
Shader compile instanced-meshes-with-shadows.shader validation-failed
WARNING:: validation failed: effects.shader validation status 0
Shader compile effects.shader validation-failed
WARNING:: validation failed: blur-x.shader validation status 0
Shader compile blur-x.shader validation-failed
WARNING:: validation failed: blur-y.shader validation status 0
Shader compile blur-y.shader validation-failed
WARNING:: validation failed: depth-of-field.shader validation status 0
Shader compile depth-of-field.shader validation-failed
WARNING:: validation failed:
rotation-centre-cross-hairs-for-ssao.shader validation status 0
Shader compile rotation-centre-cross-hairs-for-ssao.shader validation-failed
Mesh::setup_buffers()(): GL_INVALID_OPERATION
DEBUG:: in setup_python_with_coot_modules() pkgpydirectory:
/opt/homebrew/Cellar/coot/1.1.19/share/coot/../../lib/python3.14/site-packages/coot
DEBUG:: in setup_python_with_coot_modules() pydirectory:
/opt/homebrew/Cellar/coot/1.1.19/share/coot/../../lib/python3.14/site-packages
DEBUG:: in setup_python_with_coot_modules() appending to sys path:
/opt/homebrew/Cellar/coot/1.1.19/share/coot/../../lib/python3.14/site-packages
DEBUG:: in setup_python_with_coot_modules() appending to sys path:
/opt/homebrew/Cellar/coot/1.1.19/share/coot/../../lib/python3.14/site-packages/coot
DEBUG:: in setup_python_with_coot_modules() sys imported
DEBUG:: in setup_python_with_coot_modules() PyImport_ImportModule()
coot: 0x1295249f0
DEBUG:: in setup_python_with_coot_modules() PyImport_ImportModule()
coot_utils: 0x1360a18f0
(MacCoot:30336): GLib-GIRepository-WARNING **: 17:00:48.574: Failed to
load shared library 'libgobject-2.0.0.dylib' referenced by the
typelib: dlopen(libgobject-2.0.0.dylib, 0x0009): tried:
'libgobject-2.0.0.dylib' (no such file),
'/System/Volumes/Preboot/Cryptexes/OSlibgobject-2.0.0.dylib' (no such
file), '/usr/lib/libgobject-2.0.0.dylib' (no such file, not in dyld
cache), 'libgobject-2.0.0.dylib' (no such file)
(MacCoot:30336): GLib-GIRepository-WARNING **: 17:00:48.579: Failed to
load shared library 'libglib-2.0.0.dylib' referenced by the typelib:
dlopen(libglib-2.0.0.dylib, 0x0009): tried: 'libglib-2.0.0.dylib' (no
such file), '/System/Volumes/Preboot/Cryptexes/OSlibglib-2.0.0.dylib'
(no such file), '/usr/lib/libglib-2.0.0.dylib' (no such file, not in
dyld cache), 'libglib-2.0.0.dylib' (no such file)
Traceback (most recent call last):
File "/opt/homebrew/lib/python3.14/site-packages/coot/coot_gui.py",
line 39, in <module>
from gi.repository import Gtk, GObject
File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 924, in _load_unlocked
File "<frozen importlib._bootstrap>", line 816, in module_from_spec
File "/opt/homebrew/lib/python3.14/site-packages/gi/importer.py",
line 144, in create_module
importlib.import_module("gi.repository." + dep.split("-")[0])
~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/opt/homebrew/Cellar/[email protected]/3.14.2/Frameworks/Python.framework/Versions/3.14/lib/python3.14/importlib/__init__.py",
line 88, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "<frozen importlib._bootstrap>", line 1398, in _gcd_import
File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 924, in _load_unlocked
File "<frozen importlib._bootstrap>", line 816, in module_from_spec
File "/opt/homebrew/lib/python3.14/site-packages/gi/importer.py",
line 144, in create_module
importlib.import_module("gi.repository." + dep.split("-")[0])
~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/opt/homebrew/Cellar/[email protected]/3.14.2/Frameworks/Python.framework/Versions/3.14/lib/python3.14/importlib/__init__.py",
line 88, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "<frozen importlib._bootstrap>", line 1398, in _gcd_import
File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 924, in _load_unlocked
File "<frozen importlib._bootstrap>", line 816, in module_from_spec
File "/opt/homebrew/lib/python3.14/site-packages/gi/importer.py",
line 144, in create_module
importlib.import_module("gi.repository." + dep.split("-")[0])
~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/opt/homebrew/Cellar/[email protected]/3.14.2/Frameworks/Python.framework/Versions/3.14/lib/python3.14/importlib/__init__.py",
line 88, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "<frozen importlib._bootstrap>", line 1398, in _gcd_import
File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 924, in _load_unlocked
File "<frozen importlib._bootstrap>", line 816, in module_from_spec
File "/opt/homebrew/lib/python3.14/site-packages/gi/importer.py",
line 144, in create_module
importlib.import_module("gi.repository." + dep.split("-")[0])
~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/opt/homebrew/Cellar/[email protected]/3.14.2/Frameworks/Python.framework/Versions/3.14/lib/python3.14/importlib/__init__.py",
line 88, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "<frozen importlib._bootstrap>", line 1398, in _gcd_import
File "<frozen importlib._bootstrap>", line 1371, in _find_and_load
File "<frozen importlib._bootstrap>", line 1342, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 924, in _load_unlocked
File "<frozen importlib._bootstrap>", line 816, in module_from_spec
File "/opt/homebrew/lib/python3.14/site-packages/gi/importer.py",
line 145, in create_module
return load_overrides(introspection_module)
File "/opt/homebrew/lib/python3.14/site-packages/gi/overrides/__init__.py",
line 128, in load_overrides
override_mod = importlib.import_module(override_package_name)
File
"/opt/homebrew/Cellar/[email protected]/3.14.2/Frameworks/Python.framework/Versions/3.14/lib/python3.14/importlib/__init__.py",
line 88, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/homebrew/lib/python3.14/site-packages/gi/overrides/GLib.py",
line 39, in <module>
from gi import _option as option
File "/opt/homebrew/lib/python3.14/site-packages/gi/_option.py",
line 46, in <module>
OPTION_CONTEXT_ERROR_QUARK = GLib.quark_to_string(GLib.option_error_quark())
~~~~~~~~~~~~~~~~~~~~~~~^^
gi._error.GError: gi-invoke-error-quark: Could not locate
g_option_error_quark: dlopen(libglib-2.0.0.dylib, 0x0009): tried:
'libglib-2.0.0.dylib' (no such file),
'/System/Volumes/Preboot/Cryptexes/OSlibglib-2.0.0.dylib' (no such
file), '/usr/lib/libglib-2.0.0.dylib' (no such file, not in dyld
cache), 'libglib-2.0.0.dylib' (no such file) (1)
DEBUG:: in setup_python_with_coot_modules() PyImport_ImportModule()
for gui_module: 0x0
DEBUG:: combobox_get_imol(): bad state (no active iter in combobox)
INFO:: handle_start_scripts(): Load python script
/Users/ps/.config/Coot/coot_preferences.py
```
Best,
Pranav
--
Pranav Shah
Postdoctoral Research Fellow.
Division of Structural Biology,
Wellcome Trust Centre for Human Genetics,
University of Oxford,
Roosevelt Drive, Oxford OX3 7BN,
UK
On Wed, Dec 17, 2025 at 4:18 PM Paul Emsley
<[email protected]> wrote:
>
> On 17/12/2025 15:29, Paul Emsley wrote:
> >
> > I will see what I can do about keypad + and -.
> >
> >
> Struck while the iron was hot. Easy as pie, it turns out. It is in HEAD
> now and will be in 1.1.20.
>
> Paul.
>
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