Am 1/15/22 um 19:01 schrieb Marco Atzeri:
On 14.01.2022 22:48, Alois Schlögl wrote:
Am 1/14/22 um 11:09 schrieb Marco Atzeri:
On 12.01.2022 23:59, Alois Schlögl wrote:
I was playing with the CMakeList.txt to see if that was more easy
than your deep patch of the upstream Makefile's
I'm afraid that this "deep patch" is just an accidental artifact.
When running configure, all Makefile are rebuild from Makefile.in,
The Makefile(s) were packaged just by accident in v2.3.3.
But in fact these Makefiles should not have part of the released
package.
add DIFF_EXCLUDES="Makefile" to avoid the artifact
Cheers,
Alois
Dear Marco,
attached is the revised version.
In addition, I'm trying also to include the python39-biosig package.
Could you please check whether this would work ?
Cheers,
Alois
# package name
NAME="biosig"
VERSION=2.3.3
RELEASE=1
# .hint generation
CATEGORY="Libs,Science"
SUMMARY="Tools for biomedical signal processing."
DESCRIPTION="BioSig is an open source software library for
biomedical signal processing, featuring for example the
analysis of biosignals such as the electroencephalogram (EEG),
electrocorticogram (ECoG), electrocardiogram (ECG),
electrooculogram (EOG), electromyogram (EMG), respiration,
and so on. Major application areas are: Neuroinformatics,
brain-computer interfaces, neurophysiology, psychology, c
ardiovascular systems and sleep research. The aim of the
BioSig project is to foster research in biomedical signal
processing by providing open source software tools for many
different applications. Generally, many concerns have to be a
ddressed in this scientific field. BioSig handles this by providing
solutions for data acquisition, artifact processing, quality control,
feature extraction, classification, modeling, data visualization, etc. "
# source and patch files
SRC_URI="https://sourceforge.net/projects/biosig/files/BioSig%20for%20C_C%2B%2B/src/biosig-2.3.3.src.tar.gz";
# PATCH_URI="biosig-2.3.3-fix-build.patch"
# use the standard src_compile, src_install and src_test
PKG_NAMES="libbiosig libbiosig-devel biosig-tools python39-biosig"
# PKG_NAMES="libbiosig libbiosig-devel biosig-tools"
biosig_tools_CONTENTS="
usr/bin/save2gdf.exe
usr/bin/physicalunits.exe
usr/bin/biosig2gdf.exe
usr/share/man/man1/save2gdf.1.gz
usr/share/man/man1/biosig2gdf.1.gz
usr/share/man/man1/biosig_fhir.1.gz
usr/share/man/man1/physicalunits.1.gz
usr/share/doc/biosig/COPYING
usr/share/doc/biosig/README
"
# not included yet
# usr/share/man/biosig_fhir.1 usr/share/man/sigviewer.1
libbiosig_CONTENTS="
usr/bin/libbiosig.dll
usr/bin/libphysicalunits.dll
"
libbiosig_devel_CONTENTS="
usr/include/biosig-dev.h
usr/include/biosig.h
usr/include/biosig2.h
usr/include/gdftime.h
usr/include/physicalunits.h
usr/include/biosig-network.h
usr/include/mdc_ecg_codes.h
usr/lib/libbiosig.a
usr/lib/libbiosig.dll.a
usr/lib/libphysicalunits.a
usr/lib/libphysicalunits.dll.a
usr/lib/pkgconfig/libbiosig.pc
"
#python3-biosig_CONTENTS="
# dist/Biosig-2.3.3-cp39-cp39-cygwin_3_3_3_x86_64.whl
#"
DIFF_EXCLUDES="depend Makefile"
# use not standard src_compile, src_install and src_test
src_compile() {
cd ${S}
lndirs
cd ${B}
cygautoreconf
cygconf # --prefix=/usr
# libbiosig
cygmake lib
# biosig-tools w/o biosig_fhir
cygmake -C biosig4c++ save2gdf physicalunits biosig2gdf
# python3-biosig
cygmake -C biosig4c++/python wheel
# cd ${B}/biosig4c++/python/
# python3_distutils_compile bdist_wheel
# python3_wheel_compile
}
src_install() {
cd ${S}
doinclude ${S}/biosig4c++/*.h
dobin ${B}/biosig4c++/save2gdf.exe
# dobin ${B}/biosig4c++/biosig_fhir.exe
dobin ${B}/biosig4c++/biosig2gdf.exe
dobin ${B}/biosig4c++/physicalunits.exe
dobin ${B}/biosig4c++/libbiosig.dll
dobin ${B}/biosig4c++/libphysicalunits.dll
dolib ${B}/biosig4c++/libbiosig.dll.a
dolib ${B}/biosig4c++/libbiosig.a
dolib ${B}/biosig4c++/libphysicalunits.dll.a
dolib ${B}/biosig4c++/libphysicalunits.a
dopkgconfig ${B}/biosig4c++/libbiosig.pc
# doman ${S}/biosig4c++/doc/bin2rec.1
doman ${S}/biosig4c++/doc/biosig2gdf.1
doman ${S}/biosig4c++/doc/biosig_fhir.1
doman ${S}/biosig4c++/doc/physicalunits.1
doman ${S}/biosig4c++/doc/save2gdf.1
# dowheel
${B}/biosig4c++/python/dist/Biosig-2.3.3-cp39-cp39-cygwin_3_3_3_x86_64.whl
}
src_test() {
cd ${B}
biosig4c++/physicalunits.exe
biosig4c++/save2gdf.exe --help
# biosig4c++/biosig_fhir.exe --help
python -c "import biosig"
}
# comment
sdesc: "Tools for biomedical signal processing"
ldesc: "Library for biomedical signal processing,
featuring for example the analysis of biosignals such
as the electroencephalogram (EEG), electrocorticogram (ECoG),
electrocardiogram (ECG), electrooculogram (EOG), electromyogram (EMG),
respiration, etc. Major application areas are: Neuroinformatics,
brain-computer interfaces, neurophysiology, psychology,
cardiovascular systems and sleep research. The aim of the
BioSig project is to foster research in biomedical signal
processing by providing open source software tools for many
different applications. Generally, many concerns have to be addressed
in this scientific field. BioSig handles this by providing solutions for
data acquisition, artifact processing, quality control, feature extraction,
classification, modeling, data visualization, etc. "
category: Libs,Science,Utils
homepage: http://biosig.sourceforge.net/
build-depends: libb64 libcholmod-dev libtinyxml libz python-wheel-wheel
test:
skip:
version: 2.3.3
# disable-check: check-name [check-name...]
# comment
sdesc: "Tools for biomedical signal processing"
ldesc: "Library for biomedical signal processing,
featuring for example the analysis of biosignals such
as the electroencephalogram (EEG), electrocorticogram (ECoG),
electrocardiogram (ECG), electrooculogram (EOG), electromyogram (EMG),
respiration, etc. Major application areas are: Neuroinformatics,
brain-computer interfaces, neurophysiology, psychology,
cardiovascular systems and sleep research. The aim of the
BioSig project is to foster research in biomedical signal
processing by providing open source software tools for many
different applications. Generally, many concerns have to be addressed
in this scientific field. BioSig handles this by providing solutions for
data acquisition, artifact processing, quality control, feature extraction,
classification, modeling, data visualization, etc. "
category: Libs,Science,Utils
requires: libb64 libcholmod tinyxml cygwin
# depends: version-relation[, version-relation...]
# obsoletes: version-relation[, version-relation...]
# provides: package[, package...]
# conflicts: version-relation[, version-relation...]
external-source: release/biosig/biosig-2.3.3-1-src.tar.xz
# message: id "some text"
test:
version: 2.3.3
# disable-check: check-name [check-name...]
# comment
sdesc: "Libary for biomedical signal processing"
ldesc: "Libary for biomedical signal processing"
category: Libs
requires: cholmod cygwin
# depends: version-relation[, version-relation...]
# obsoletes: version-relation[, version-relation...]
provides: libbiosig
# conflicts: version-relation[, version-relation...]
external-source: biosig
# message: id "some text"
test:
version: 2.3.3
# disable-check: check-name [check-name...]
# comment
sdesc: "Libary for biomedical signal processing"
ldesc: "Libary for biomedical signal processing"
category: Libs
requires: cholmod-devel cygwin
# depends: version-relation[, version-relation...]
# obsoletes: version-relation[, version-relation...]
# provides: libbiosig
# conflicts: version-relation[, version-relation...]
external-source: biosig
# message: id "some text"
test:
version: 2.3.3
# disable-check: check-name [check-name...]
# comment
sdesc: "Biosig for Python"
ldesc: "Python-bindings to libbiosig, can be use
to load all biosig dataformats in to Python.
category: Libs,Science,Utils
requires: libbiosig-devel python39 python39-numpy cygwin
# depends: version-relation[, version-relation...]
# obsoletes: version-relation[, version-relation...]
# provides: package[, package...]
# conflicts: version-relation[, version-relation...]
external-source: release/biosig/biosig-2.3.3-1-src.tar.xz
# message: id "some text"
test:
version: 2.3.3
# disable-check: check-name [check-name...]
