Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits: 399968cf by Andreas Tille at 2022-01-04T13:42:26+00:00 automatic update - - - - - 2 changed files: - debian-med-tests.txt - outdated_med-packages.txt Changes: ===================================== debian-med-tests.txt ===================================== @@ -1,23 +1,23 @@ -Last-Update: Tue, 04 Jan 2022 01:42:03 +0000 +Last-Update: Tue, 04 Jan 2022 13:42:03 +0000 Source | Vote | Tasks | Tags -------------------------------+--------+-----------------------------------------------------+---------------------------------------------------------------------- - dcmtk | 172 | {imaging,covid-19} | - orthanc | 104 | {covid-19,imaging,practice} | - orthanc-wsi | 53 | {oncology,laboratory,practice,his,covid-19,imaging} | - htsjdk | 31 | {bio-dev} | + dcmtk | 176 | {imaging,covid-19} | + orthanc | 107 | {covid-19,imaging,practice} | + orthanc-wsi | 54 | {oncology,laboratory,practice,his,covid-19,imaging} | + htsjdk | 30 | {bio-dev} | dicom3tools | 26 | {imaging} | - amide | 24 | {imaging} | - dcm2niix | 22 | {imaging} | + amide | 23 | {imaging} | dicomscope | 22 | {imaging} | + dcm2niix | 21 | {imaging} | orthanc-webviewer | 17 | {imaging} | gdcm | 15 | {covid-19,imaging} | gnumed-server | 15 | {covid-19,practice} | - ngs-sdk | 15 | {bio-dev} | minc-tools | 14 | {imaging} | + ngs-sdk | 14 | {bio-dev} | adun.app | 13 | {bio} | - insighttoolkit4 | 13 | {imaging-dev} | pixelmed | 13 | {imaging} | + insighttoolkit4 | 12 | {imaging-dev} | openslide | 12 | {imaging} | dicomnifti | 11 | {imaging} | invesalius | 11 | {imaging} | @@ -25,11 +25,11 @@ Last-Update: Tue, 04 Jan 2022 01:42:03 +0000 libminc | 9 | {imaging-dev} | nifticlib | 9 | {imaging} | jebl2 | 8 | {bio-dev} | - king | 8 | {typesetting,imaging} | mia | 8 | {imaging} | nifticlib | 8 | {imaging-dev} | plastimatch | 8 | {imaging} | biojava-live | 7 | {bio-dev} | + king | 7 | {typesetting,imaging} | mrtrix3 | 7 | {imaging} | ngs-sdk | 7 | {bio-dev} | lagan | 6 | {bio} | @@ -42,19 +42,21 @@ Last-Update: Tue, 04 Jan 2022 01:42:03 +0000 salmon | 6 | {covid-19,bio} | beast-mcmc | 5 | {bio-phylogeny,bio} | libdivsufsort | 5 | {bio-dev} | + obitools | 5 | {bio} | bio-tradis | 4 | {bio-dev,bio} | bitseq | 4 | {bio} | brig | 4 | {bio} | embassy-domainatrix | 4 | {bio,cloud} | embassy-domalign | 4 | {cloud,bio} | nifti2dicom | 4 | {imaging} | - obitools | 4 | {bio} | oscar | 4 | {data,tools,practice} | tracetuner | 4 | {bio} | anfo | 3 | {bio,cloud} | arden | 3 | {cloud,bio} | assemblytics | 3 | {bio} | + atropos | 3 | {bio} | bart-view | 3 | {imaging} | + biomaj3-cli | 3 | {cloud} | canu | 3 | {bio} | cat-bat | 3 | {bio,covid-19} | clonalorigin | 3 | {bio} | @@ -81,8 +83,6 @@ Last-Update: Tue, 04 Jan 2022 01:42:03 +0000 treeview | 3 | {bio,bio-phylogeny} | tvc | 3 | {bio} | zalign | 3 | {bio,cloud} | - atropos | 2 | {bio} | - biomaj3-cli | 2 | {cloud} | blimps | 2 | {bio} | clonalframeml | 2 | {covid-19,bio} | delly | 2 | {bio,covid-19} | @@ -96,12 +96,14 @@ Last-Update: Tue, 04 Jan 2022 01:42:03 +0000 lamarc | 2 | {bio} | libpal-java | 2 | {bio-dev} | mauve-aligner | 2 | {bio} | + microbegps | 2 | {bio} | orthanc-gdcm | 2 | {imaging} | orthanc-mysql | 2 | {imaging} | papyrus | 2 | {imaging-dev} | phyutility | 2 | {bio,cloud} | pique | 2 | {bio} | placnet | 2 | {bio} | + plasmidid | 2 | {covid-19,bio} | plasmidseeker | 2 | {bio} | pplacer | 2 | {covid-19,bio,bio-phylogeny} | proalign | 2 | {bio-phylogeny,bio} | @@ -130,12 +132,11 @@ Last-Update: Tue, 04 Jan 2022 01:42:03 +0000 emboss-explorer | 1 | {bio} | getdata | 1 | {bio} | libbio-mage-utils-perl | 1 | {bio-dev} | + libchado-perl | 1 | {bio-dev} | libctapimkt | 1 | {practice} | libsbml | 1 | {bio-dev} | libvistaio | 1 | {imaging-dev} | metaphlan2 | 1 | {bio} | - microbegps | 1 | {bio} | - plasmidid | 1 | {covid-19,bio} | python-wdlparse | 1 | {bio-dev} | shovill | 1 | {covid-19,bio} | varscan | 1 | {bio,covid-19} | @@ -162,7 +163,6 @@ Last-Update: Tue, 04 Jan 2022 01:42:03 +0000 libbpp-raa | 0 | {bio-dev} | libbpp-seq | 0 | {bio-dev} | libbpp-seq-omics | 0 | {bio-dev} | - libchado-perl | 0 | {bio-dev} | libgenome | 0 | {bio-dev} | libgkarrays | 0 | {bio-dev} | libhmsbeagle | 0 | {bio-dev} | @@ -196,6 +196,7 @@ Last-Update: Tue, 04 Jan 2022 01:42:03 +0000 resfinder-db | 0 | {bio} | sbmltoolbox | 0 | {bio-dev} | seq-gen | 0 | {bio} | + sight | 0 | {imaging-dev} | simpleitk | 0 | {imaging-dev} | smrtanalysis | 0 | {bio,covid-19} | srf | 0 | {bio-dev} | @@ -203,7 +204,6 @@ Last-Update: Tue, 04 Jan 2022 01:42:03 +0000 xdffileio | 0 | {imaging-dev} | xxsds-dynamic | 0 | {bio-dev} | mssstest | -1 | {tools} | - sight | -1 | {imaging-dev} | tipp | -1 | {bio,covid-19} | (233 rows) ===================================== outdated_med-packages.txt ===================================== The diff for this file was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/399968cf3c75590dd5abb5995ccb3f0032a71e7c -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/399968cf3c75590dd5abb5995ccb3f0032a71e7c You're receiving this email because of your account on salsa.debian.org.
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