Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits: 41e243e1 by Andreas Tille at 2022-01-26T13:42:20+00:00 automatic update - - - - - 2 changed files: - debian-med-tests.txt - outdated_med-packages.txt Changes: ===================================== debian-med-tests.txt ===================================== @@ -1,60 +1,59 @@ -Last-Update: Wed, 26 Jan 2022 01:42:03 +0000 +Last-Update: Wed, 26 Jan 2022 13:42:04 +0000 Source | Vote | Tasks | Tags -------------------------------+--------+-----------------------------------------------------+---------------------------------------------------------------------- dcmtk | 181 | {covid-19,imaging} | - orthanc | 104 | {imaging,covid-19,practice} | + orthanc | 105 | {imaging,covid-19,practice} | orthanc-wsi | 56 | {practice,laboratory,covid-19,imaging,his,oncology} | - htsjdk | 32 | {bio-dev} | + htsjdk | 34 | {bio-dev} | dicom3tools | 29 | {imaging} | - amide | 28 | {imaging} | - dicomscope | 28 | {imaging} | - dcm2niix | 23 | {imaging} | + amide | 27 | {imaging} | + dicomscope | 26 | {imaging} | + dcm2niix | 24 | {imaging} | orthanc-webviewer | 20 | {imaging} | ngs-sdk | 15 | {bio-dev} | gnumed-server | 14 | {practice,covid-19} | - invesalius | 14 | {imaging} | gdcm | 13 | {covid-19,imaging} | + invesalius | 12 | {imaging} | minc-tools | 12 | {imaging} | - gdcm | 11 | {imaging-dev} | + adun.app | 10 | {bio} | + gdcm | 10 | {imaging-dev} | lagan | 10 | {bio} | - adun.app | 9 | {bio} | - ngs-sdk | 9 | {bio-dev} | nifti2dicom | 9 | {imaging} | - openslide | 9 | {imaging} | orthanc-dicomweb | 9 | {imaging,covid-19} | pixelmed | 9 | {imaging} | biojava-live | 8 | {bio-dev} | dicomnifti | 8 | {imaging} | + libminc | 8 | {imaging-dev} | + librg-utils-perl | 8 | {bio} | mia | 8 | {imaging} | mrtrix3 | 8 | {imaging} | + ngs-sdk | 8 | {bio-dev} | + nifticlib | 8 | {imaging-dev} | nifticlib | 8 | {imaging} | + openslide | 8 | {imaging} | orthanc-postgresql | 8 | {imaging} | - libminc | 7 | {imaging-dev} | - librg-utils-perl | 7 | {bio} | + ngs-sdk | 7 | {bio-dev} | nifti2dicom | 7 | {imaging} | - nifticlib | 7 | {imaging-dev} | plastimatch | 7 | {imaging} | libncl | 6 | {bio} | - ngs-sdk | 6 | {bio-dev} | obitools | 6 | {bio} | - dicompyler | 5 | {oncology} | jebl2 | 5 | {bio-dev} | + libdivsufsort | 5 | {bio-dev} | nipype | 5 | {imaging-dev,imaging} | - openslide | 5 | {imaging-dev} | orthanc-mysql | 5 | {imaging} | salmon | 5 | {bio,covid-19} | treeview | 5 | {bio-phylogeny,bio} | arden | 4 | {bio,cloud} | bio-tradis | 4 | {bio,bio-dev} | + dicompyler | 4 | {oncology} | elastix | 4 | {imaging} | embassy-domalign | 4 | {cloud,bio} | getdata | 4 | {bio} | ghmm | 4 | {bio} | jellyfish1 | 4 | {bio} | king | 4 | {typesetting,imaging} | - libdivsufsort | 4 | {bio-dev} | - melting | 4 | {bio,cloud} | + openslide | 4 | {imaging-dev} | pymia | 4 | {imaging-dev} | spread-phy | 4 | {bio-phylogeny,bio} | staden | 4 | {bio} | @@ -70,10 +69,13 @@ Last-Update: Wed, 26 Jan 2022 01:42:03 +0000 clonalorigin | 3 | {bio} | embassy-domainatrix | 3 | {bio,cloud} | lamarc | 3 | {bio} | + libbio-mage-utils-perl | 3 | {bio-dev} | libsbml | 3 | {bio-dev} | + melting | 3 | {bio,cloud} | mhap | 3 | {bio-ngs,bio} | orthanc-gdcm | 3 | {imaging} | orthanc-python | 3 | {covid-19} | + oscar | 3 | {data,tools,practice} | phyutility | 3 | {bio,cloud} | piler | 3 | {bio} | rambo-k | 3 | {bio} | @@ -97,12 +99,10 @@ Last-Update: Wed, 26 Jan 2022 01:42:03 +0000 hinge | 2 | {bio} | ipig | 2 | {bio} | jmodeltest | 2 | {bio,bio-phylogeny} | - libbio-mage-utils-perl | 2 | {bio-dev} | libpal-java | 2 | {bio-dev} | librdp-taxonomy-tree-java | 2 | {bio-dev} | mauve-aligner | 2 | {bio} | metaphlan2 | 2 | {bio} | - oscar | 2 | {data,tools,practice} | placnet | 2 | {bio} | plasmidseeker | 2 | {bio} | proalign | 2 | {bio,bio-phylogeny} | @@ -124,10 +124,12 @@ Last-Update: Wed, 26 Jan 2022 01:42:03 +0000 cufflinks | 1 | {bio,cloud} | emmax | 1 | {bio} | kmerresistance | 1 | {bio} | + libchado-perl | 1 | {bio-dev} | libgenome | 1 | {bio-dev} | libvistaio | 1 | {imaging-dev} | microbegps | 1 | {bio} | mssstest | 1 | {tools} | + opencfu | 1 | {laboratory} | pigx-rnaseq | 1 | {bio,covid-19} | pique | 1 | {bio} | plasmidid | 1 | {covid-19,bio} | @@ -164,7 +166,6 @@ Last-Update: Wed, 26 Jan 2022 01:42:03 +0000 libbpp-raa | 0 | {bio-dev} | libbpp-seq | 0 | {bio-dev} | libbpp-seq-omics | 0 | {bio-dev} | - libchado-perl | 0 | {bio-dev} | libctapimkt | 0 | {practice} | libgkarrays | 0 | {bio-dev} | libhmsbeagle | 0 | {bio-dev} | @@ -187,15 +188,14 @@ Last-Update: Wed, 26 Jan 2022 01:42:03 +0000 milib | 0 | {covid-19,bio-dev} | ncbi-vdb | 0 | {bio-dev} | nifticlib | 0 | {imaging-dev} | - opencfu | 0 | {laboratory} | opensurgsim | 0 | {imaging-dev} | orthanc-imagej | 0 | {imaging} | papyrus | 0 | {imaging-dev} | parallel-fastq-dump | 0 | {covid-19} | pbcopper | 0 | {bio-dev} | pbseqlib | 0 | {bio-dev} | - python-seqcluster | 0 | {covid-19,bio-dev} | python-seqcluster | 0 | {bio} | + python-seqcluster | 0 | {covid-19,bio-dev} | resfinder-db | 0 | {bio} | sbmltoolbox | 0 | {bio-dev} | shovill | 0 | {covid-19,bio} | ===================================== outdated_med-packages.txt ===================================== The diff for this file was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/41e243e138ec4202a8d587d963a69c53d407136e -- View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/41e243e138ec4202a8d587d963a69c53d407136e You're receiving this email because of your account on salsa.debian.org.
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