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commit 2ca2bc7e6f1676feb9d56b14ca13a4bb28ef17e9 Author: Andreas Tille <[email protected]> Date: Wed Apr 27 18:31:27 2016 +0000 New upstream version, add r-cran-class to Suggests and autopkgtest Depends --- debian/changelog | 8 ++++++ debian/control | 3 ++- debian/patches/gf_distance_definition.patch | 41 ----------------------------- debian/patches/series | 1 - debian/tests/control | 2 +- 5 files changed, 11 insertions(+), 44 deletions(-) diff --git a/debian/changelog b/debian/changelog index 896e086..cfea456 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,11 @@ +r-bioc-genefilter (1.52.1-1) unstable; urgency=medium + + * New upstream version (patch applied upstream) + * cme fix dpkg-control + * Add r-cran-class to Suggests and autopkgtest Depends + + -- Andreas Tille <[email protected]> Wed, 27 Apr 2016 20:23:02 +0200 + r-bioc-genefilter (1.52.0-2) unstable; urgency=medium * Apply upstream patch to fix conflicting declarations of function gf_distance diff --git a/debian/control b/debian/control index 270f537..e363b53 100644 --- a/debian/control +++ b/debian/control @@ -9,7 +9,7 @@ Build-Depends: debhelper (>= 9), r-bioc-annotationdbi, r-bioc-annotate, r-cran-survival -Standards-Version: 3.9.6 +Standards-Version: 3.9.8 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-genefilter/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-genefilter/trunk/ Homepage: http://bioconductor.org/packages/release/bioc/html/genefilter.html @@ -22,6 +22,7 @@ Depends: ${R:Depends}, r-bioc-annotationdbi, r-bioc-annotate, r-cran-survival +Suggests: r-cran-class Description: methods for filtering genes from microarray experiments This BioConductor module provides methods for filtering genes from microarray experiments. It contains some basic functions for filtering genes. diff --git a/debian/patches/gf_distance_definition.patch b/debian/patches/gf_distance_definition.patch deleted file mode 100644 index 604f095..0000000 --- a/debian/patches/gf_distance_definition.patch +++ /dev/null @@ -1,41 +0,0 @@ -Origin: upstream, https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/genefilter r112947 -Author:"Morgan, Martin" <[email protected]> -Last-Update: 2016-01-27 16:59:31 -Bug-Debian: https://bugs.debian.org/812767 -Description: bugfix: rationalize C signatures to gf_distance - - ---- a/src/nd.c -+++ b/src/nd.c -@@ -26,17 +26,14 @@ - #if defined(USING_R) /*( R-specific stuff */ - - #define S_CDECL --typedef int RSInt; -- - #ifdef HAVE_CONFIG_H - # include <config.h> - #endif - /* we need this first to get the right options for math.h */ - #include <R_ext/Arith.h> - --#include <R.h> -+#include "genefilter.h" - #include <Rmath.h> --#include <Rinternals.h> - #include "R_ext/Error.h" - #include "R_ext/Applic.h" - ---- a/src/genefilter.h -+++ b/src/genefilter.h -@@ -2,5 +2,8 @@ - #include <R.h> - #include <Rinternals.h> - --void gf_distance(double *x, double *kval, int *nr, int *nc, double *d, -- int *diag, int *method); -+typedef int RSInt; -+ -+void gf_distance(double *x, RSInt *nr, RSInt *nc, RSInt *g, double *d, -+ RSInt *iRow, RSInt *nInterest, RSInt *nResults, -+ RSInt *method, double *wval); diff --git a/debian/patches/series b/debian/patches/series deleted file mode 100644 index c25ae49..0000000 --- a/debian/patches/series +++ /dev/null @@ -1 +0,0 @@ -gf_distance_definition.patch diff --git a/debian/tests/control b/debian/tests/control index d2aa55a..5f98003 100644 --- a/debian/tests/control +++ b/debian/tests/control @@ -1,3 +1,3 @@ Tests: run-unit-test -Depends: @ +Depends: @, r-cran-class Restrictions: allow-stderr -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-genefilter.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
