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commit 1cc2376459ccf34046b5effb94c4b8acce3bbafc Author: Andreas Tille <[email protected]> Date: Sun Nov 8 19:43:11 2015 +0000 New upstream version, add autopkgtest --- debian/README.test | 8 ++++++++ debian/changelog | 7 +++++++ debian/examples | 1 + debian/tests/control | 3 +++ debian/tests/run-unit-test | 18 ++++++++++++++++++ debian/watch | 2 +- 6 files changed, 38 insertions(+), 1 deletion(-) diff --git a/debian/README.test b/debian/README.test new file mode 100644 index 0000000..ef34ccc --- /dev/null +++ b/debian/README.test @@ -0,0 +1,8 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +To run the unit tests provided by the package you can do + + sh run-unit-test + +in this directory. diff --git a/debian/changelog b/debian/changelog index 703d921..4d21995 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,10 @@ +r-bioc-genefilter (1.52.0-1) unstable; urgency=medium + + * New upstream version + * Add autopkgtest + + -- Andreas Tille <[email protected]> Sun, 08 Nov 2015 20:33:36 +0100 + r-bioc-genefilter (1.50.0-1) unstable; urgency=medium * Initial release (closes: #794279) diff --git a/debian/examples b/debian/examples new file mode 100644 index 0000000..18244c8 --- /dev/null +++ b/debian/examples @@ -0,0 +1 @@ +vignettes diff --git a/debian/tests/control b/debian/tests/control new file mode 100644 index 0000000..d2aa55a --- /dev/null +++ b/debian/tests/control @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: @ +Restrictions: allow-stderr diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test new file mode 100644 index 0000000..53182d6 --- /dev/null +++ b/debian/tests/run-unit-test @@ -0,0 +1,18 @@ +#!/bin/sh -e +oname=genefilter +pkg=r-bioc-`echo $oname | tr [A-Z] [a-z]` + +if [ "$ADTTMP" = "" ] ; then + ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` +fi +cd $ADTTMP +cp /usr/share/doc/$pkg/examples/vignettes/* $ADTTMP +find . -name "*.gz" -exec gunzip \{\} \; +for rnw in `ls *.[rRS]nw` ; do +rfile=`echo $rnw | sed 's/\.[rRS]nw/.R/'` +R --no-save <<EOT + Stangle("$rnw") + source("$rfile", echo=TRUE) +EOT +done +rm -rf * diff --git a/debian/watch b/debian/watch index a5eb4b4..c05be04 100644 --- a/debian/watch +++ b/debian/watch @@ -1,3 +1,3 @@ version=3 -opts=downloadurlmangle=s/\.\./packages\/release\/bioc/ \ +opts=downloadurlmangle=s?^(.*)\.\.?http:$1packages/release/bioc? \ http://www.bioconductor.org/packages/release/bioc/html/genefilter.html .*/genefilter_([\d\.]+)\.tar\.gz -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-genefilter.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
