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commit 506a1f77386cbe2f551d24517312ac38d87dc98b Merge: 9c77d34 4aba7da Author: Andreas Tille <[email protected]> Date: Mon Oct 2 15:07:44 2017 +0200 Updated version 1.58.1 from 'upstream/1.58.1' with Debian dir ad8b1370a8d9909539d0c7f282a9d389e4dc50f6 .Rinstignore | 1 + DESCRIPTION | 23 + NAMESPACE | 129 ++ NEWS | 7 + R/AllClasses.R | 35 + R/AllGenerics.R | 43 + R/all.R | 183 +++ R/dist2.R | 21 + R/eSetFilter.R | 320 +++++ R/fastT.R | 32 + R/filter_volcano.R | 57 + R/filtered_p.R | 37 + R/genefinder.R | 143 +++ R/half.range.mode.R | 51 + R/kappa_p.R | 10 + R/nsFilter.R | 264 ++++ R/rejection_plot.R | 79 ++ R/rowROC-accessors.R | 153 +++ R/rowSds.R | 9 + R/rowpAUCs-methods.R | 86 ++ R/rowttests-methods.R | 215 ++++ R/shorth.R | 48 + R/zzz.R | 9 + build/vignette.rds | Bin 0 -> 480 bytes data/tdata.R | 1952 +++++++++++++++++++++++++++++ docs/Cluster.pdf | Bin 0 -> 370 bytes docs/gcluster.tex | 30 + docs/gfilter.tex | 252 ++++ inst/doc/howtogenefilter.R | 107 ++ inst/doc/howtogenefilter.Rnw | 212 ++++ inst/doc/howtogenefilter.pdf | Bin 0 -> 115979 bytes inst/doc/howtogenefinder.R | 28 + inst/doc/howtogenefinder.Rnw | 111 ++ inst/doc/howtogenefinder.pdf | Bin 0 -> 153021 bytes inst/doc/independent_filtering.R | 152 +++ inst/doc/independent_filtering.Rnw | 468 +++++++ inst/doc/independent_filtering.pdf | Bin 0 -> 623647 bytes inst/doc/independent_filtering_plots.R | 79 ++ inst/doc/independent_filtering_plots.Rnw | 238 ++++ inst/doc/independent_filtering_plots.pdf | Bin 0 -> 441792 bytes inst/wFun/Anova.xml | 30 + inst/wFun/coxfilter.xml | 30 + inst/wFun/cv.xml | 30 + inst/wFun/gapFilter.xml | 46 + inst/wFun/kOverA.xml | 30 + inst/wFun/maxA.xml | 22 + inst/wFun/pOverA.xml | 30 + inst/wFun/ttest.xml | 30 + man/Anova.Rd | 44 + man/coxfilter.Rd | 38 + man/cv.Rd | 37 + man/dist2.Rd | 67 + man/eSetFilter.Rd | 58 + man/filter_volcano.Rd | 81 ++ man/filtered_p.Rd | 87 ++ man/filterfun.Rd | 37 + man/findLargest.Rd | 45 + man/gapFilter.Rd | 51 + man/genefilter.Rd | 54 + man/genefinder.Rd | 98 ++ man/genescale.Rd | 42 + man/half.range.mode.Rd | 105 ++ man/kOverA.Rd | 31 + man/kappa_p.Rd | 42 + man/maxA.Rd | 33 + man/nsFilter.Rd | 206 +++ man/pOverA.Rd | 39 + man/rejection_plot.Rd | 111 ++ man/rowFtests.Rd | 188 +++ man/rowROC-class.Rd | 103 ++ man/rowSds.Rd | 37 + man/rowpAUCs.Rd | 133 ++ man/shorth.Rd | 75 ++ man/tdata.Rd | 22 + man/ttest.Rd | 53 + src/genefilter.h | 9 + src/half_range_mode.cpp | 125 ++ src/init.c | 15 + src/nd.c | 346 +++++ src/pAUC.c | 179 +++ src/rowPAUCs.c | 225 ++++ src/rowttests.c | 218 ++++ src/ttest.f | 64 + vignettes/howtogenefilter.Rnw | 212 ++++ vignettes/howtogenefinder.Rnw | 111 ++ vignettes/independent_filtering.Rnw | 468 +++++++ vignettes/independent_filtering_plots.Rnw | 238 ++++ vignettes/library.bib | 172 +++ 88 files changed, 10131 insertions(+) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-genefilter.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
