Hi Tim, many thanks for testing!
On Wed, Jun 05, 2013 at 12:27:36PM +0100, Tim Booth wrote: > Hi Andreas, > > I spoke too soon on ChimeraSlayer. I've just run the test scripts > provided with QIIME and it is crashing because at some point it tries to > write to the /usr/share/microbiomeutil-data/RESOURCES directory. when I have read until this point I would have considered a patch to write the output to /var/lib/microbiomeutil-data/RESOURCES or even move the whole content to this place. > It looks like this can be fixed by pre-computing some indices, by > running these two commands as root: > > formatdb -p F -i /usr/share/microbiomeutil-data/RESOURCES/rRNA16S.gold.fasta > 2>/dev/null > > cdbfasta -C > /usr/share/microbiomeutil-data/RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta I simply trust your experience that this might bethe better solution. > So I guess these commands need to be added to postinst, with a > corresponding cleanup in postrm. Do you know where I can find an > example/template for doing this properly/robustly? When it comes to templates I can only think of /usr/share/debhelper/dh_make/debian > This also hilights that chimeraslayer needs to declare a direct > dependency on the blast2 package. I'd suggest to wait until ftpmaster has accepted the package and reupload then (or file a bug report if somethings stops us in reuploading). I'm not a fan of redrawing and reuploading from / to new queue because it creates extra manual work for ftpmaster which is finally not needed if we fix the problem in SVN quickly and upload a fix soonish. Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130605122352.gh20...@an3as.eu