Hi guys, So essentially the package build halts when it tries to run the test suite:
This is the error I'm getting when the pysam module is being imported: root@debian:~/iva-0.10.0# python3.4 setup.py test running test running egg_info writing top-level names to iva.egg-info/top_level.txt writing iva.egg-info/PKG-INFO writing dependency_links to iva.egg-info/dependency_links.txt reading manifest file 'iva.egg-info/SOURCES.txt' writing manifest file 'iva.egg-info/SOURCES.txt' running build_ext Failure: ImportError (No module named 'pysam') ... ERROR ====================================================================== ERROR: Failure: ImportError (No module named 'pysam') ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/usr/lib/python3/dist-packages/nose/loader.py", line 414, in loadTestsFromName addr.filename, addr.module) File "/usr/lib/python3/dist-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/usr/lib/python3/dist-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/usr/lib/python3.4/imp.py", line 245, in load_module return load_package(name, filename) File "/usr/lib/python3.4/imp.py", line 217, in load_package return methods.load() File "<frozen importlib._bootstrap>", line 1220, in load File "<frozen importlib._bootstrap>", line 1200, in _load_unlocked File "<frozen importlib._bootstrap>", line 1129, in _exec File "<frozen importlib._bootstrap>", line 1471, in exec_module File "<frozen importlib._bootstrap>", line 321, in _call_with_frames_removed File "/tmp/buildd/iva-0.10.0/iva/__init__.py", line 20, in <module> from iva import * File "/tmp/buildd/iva-0.10.0/iva/assembly.py", line 2, in <module> import pysam ImportError: No module named 'pysam' ---------------------------------------------------------------------- Ran 1 test in 0.016s FAILED (errors=1) If pysam is python 3 compliant, I'm tempted to create the needed symlinks in python3.4 pointing to pysam in python2.7, eg. ln -s /usr/lib/python2.7/dist-packages/pysam /usr/lib/python3.4/dist-packages/pysam I'm sure that this is not the proper way of doing things, so is there any other way I can get pysam to be installed under python3.4 rather than python2.7? Regards, Jorge