Dave, Is there something we can clarify on how to create the URL? On Sun, Apr 23, 2017 at 3:23 PM, David Kincaid <[email protected]> wrote:
> I got it figured out. I was using the wrong URL path for the database. > Working great now! > > - Dave > > On Sun, Apr 23, 2017 at 12:31 PM, David Kincaid <[email protected]> > wrote: > > > Thanks for the reply, James. I'm not very familiar with HSQLDB, so I may > > be doing it wrong, but I launched the GUI using "java > > -jar hsqldb-2.3.4.jar" and then tried to connect to the DB by changing > the > > "Type" to "HSQL Database Engine Standalone" and then setting the URL to > > point to my custom dictionary directory. It throws a SQLException that > says > > "wrong database file version". Is there some other step I'm missing? > > > > - Dave > > > > On Sat, Apr 22, 2017 at 10:31 PM, James Masanz <[email protected]> > > wrote: > > > >> Dave, > >> > >> It's an oversight that we didn't document that. Thanks for pointing that > >> out! I'll update the documentation tomorrow and post again with proper > >> details of the command to use. > >> > >> The short answer is that hsqldb jar includes a GUI. You use the 2.3.4 > >> version of that jar, which is included with the cTAKES 4.0 convenience > >> binary, to open your database. Then you close (shutdown) your DB and it > >> gets converted to 2.3.4 for you. But if the .properties file for your DB > >> indicates it's readonly, you need to have edited the properties file > first > >> to remove that. That gives you the idea. I'll write it up properly > >> tomorrow. > >> > >> Thanks for testing, > >> -- James > >> > >> > >> *Sent from my phone.* > >> > >> On Apr 22, 2017 9:39 PM, "David Kincaid" <[email protected]> > wrote: > >> > >> I finally had some time this weekend to give 4.0.0rc3 a run. The install > >> and configuration instructions worked perfectly on my Linux laptop and I > >> was able to use CVD to run the clinical pipeline successfully against > some > >> of the clinical notes I have here. > >> > >> However, I ran into a problem when I tried running my own customized > >> pipeline that includes a custom dictionary that I create (to include the > >> SNOMED veterinary extension). I get an exception while it's loading that > >> the dictionary is not the correct version. So, I assume I just need to > >> recreate that custom database? Or is there a migration utility from the > >> old > >> database version to the new version? > >> > >> I don't remember seeing mention of this, but certainly could have missed > >> it. If it's not in the release notes or install/upgrade instructions it > >> probably should be there. > >> > >> Thanks to everyone for pulling this release together and getting it out > >> the > >> door! > >> > >> - Dave > >> > > > > >
