I ended up just using the DictionaryCreator and recreating the dictionary, so it's working now. I haven't looked at the section you added to the user guide yet, but should have some time tonight to give it a go and test it.
Thanks, Dave On Mon, Apr 24, 2017 at 10:29 AM, James Masanz <masanz.ja...@gmail.com> wrote: > Dave, > Is there something we can clarify on how to create the URL? > > On Sun, Apr 23, 2017 at 3:23 PM, David Kincaid <kincaid.d...@gmail.com> > wrote: > > > I got it figured out. I was using the wrong URL path for the database. > > Working great now! > > > > - Dave > > > > On Sun, Apr 23, 2017 at 12:31 PM, David Kincaid <kincaid.d...@gmail.com> > > wrote: > > > > > Thanks for the reply, James. I'm not very familiar with HSQLDB, so I > may > > > be doing it wrong, but I launched the GUI using "java > > > -jar hsqldb-2.3.4.jar" and then tried to connect to the DB by changing > > the > > > "Type" to "HSQL Database Engine Standalone" and then setting the URL to > > > point to my custom dictionary directory. It throws a SQLException that > > says > > > "wrong database file version". Is there some other step I'm missing? > > > > > > - Dave > > > > > > On Sat, Apr 22, 2017 at 10:31 PM, James Masanz <masanz.ja...@gmail.com > > > > > wrote: > > > > > >> Dave, > > >> > > >> It's an oversight that we didn't document that. Thanks for pointing > that > > >> out! I'll update the documentation tomorrow and post again with > proper > > >> details of the command to use. > > >> > > >> The short answer is that hsqldb jar includes a GUI. You use the 2.3.4 > > >> version of that jar, which is included with the cTAKES 4.0 convenience > > >> binary, to open your database. Then you close (shutdown) your DB and > it > > >> gets converted to 2.3.4 for you. But if the .properties file for your > DB > > >> indicates it's readonly, you need to have edited the properties file > > first > > >> to remove that. That gives you the idea. I'll write it up properly > > >> tomorrow. > > >> > > >> Thanks for testing, > > >> -- James > > >> > > >> > > >> *Sent from my phone.* > > >> > > >> On Apr 22, 2017 9:39 PM, "David Kincaid" <kincaid.d...@gmail.com> > > wrote: > > >> > > >> I finally had some time this weekend to give 4.0.0rc3 a run. The > install > > >> and configuration instructions worked perfectly on my Linux laptop > and I > > >> was able to use CVD to run the clinical pipeline successfully against > > some > > >> of the clinical notes I have here. > > >> > > >> However, I ran into a problem when I tried running my own customized > > >> pipeline that includes a custom dictionary that I create (to include > the > > >> SNOMED veterinary extension). I get an exception while it's loading > that > > >> the dictionary is not the correct version. So, I assume I just need to > > >> recreate that custom database? Or is there a migration utility from > the > > >> old > > >> database version to the new version? > > >> > > >> I don't remember seeing mention of this, but certainly could have > missed > > >> it. If it's not in the release notes or install/upgrade instructions > it > > >> probably should be there. > > >> > > >> Thanks to everyone for pulling this release together and getting it > out > > >> the > > >> door! > > >> > > >> - Dave > > >> > > > > > > > > >
