I am trying to find out something like If an entity falls in one of these category, and my understanding was subject can get me these information.
SUBJECT it belongs to like - *"Vital Signs", "BP", "Physical Examination", "Family Medical History", "Lab Results"* Any idea how to achieve this. On Wed, Jan 17, 2018 at 1:05 AM, Miller, Timothy < [email protected]> wrote: > What output would you like? What are you expecting? > > This field in theory could have a few different values: patient, > family_member, other, donor(iirc?) > > But in reality our training data was very skewed towards the patient > label, and the representation we used for training is not great at > picking up section-wide cues that would be helpful (like a family > history section header). So in practice it almost always will say > "patient." It may occasionally get something very obvious: "Mother had > breast cancer" > I don't know if it will get this exact example, it probably needs to > look exactly like a training instance because we had very few to > generalize from. > Thanks > Tim > > > On Wed, 2018-01-17 at 00:57 +0530, Ratan Sharma wrote: > > I am able to pull entity information for different section correctly. > > But > > facing issues when it comes to pull subject information. The subject > > is > > always pulled as "PATIENT". > > > > I do have this added in the AssertionPipeline > > builder.add( > > SubjectCleartkAnalysisEngine.createAnnotatorDescription() ); > > > > > > Here are some sample output : > > > > Entity: 3 === Text: Blood Transfusion === Polarity: 1 === Subject: > > patient > > === EntityName: > > org.apache.ctakes.typesystem.type.textsem.SignSymptomMention > > Entity: 6 === Text: Blood === Polarity: 1 === Subject: patient === > > EntityName: > > org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention > > Entity: 3 === Text: Transfusion Reaction === Polarity: 1 === Subject: > > patient === EntityName: > > org.apache.ctakes.typesystem.type.textsem.SignSymptomMention > > Entity: 5 === Text: Transfusion === Polarity: 1 === Subject: patient > > === > > EntityName: > > org.apache.ctakes.typesystem.type.textsem.ProcedureMention > > Entity: 2 === Text: HIV === Polarity: 1 === Subject: patient === > > EntityName: > > org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention > > Entity: 6 === Text: Sickle Cell === Polarity: 1 === Subject: patient > > === > > EntityName: > > org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention > > Entity: 2 === Text: Neurologic Disorders === Polarity: 1 === Subject: > > patient === EntityName: > > org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention > > Entity: 2 === Text: Autoimmune Disorders === Polarity: 1 === Subject: > > patient === EntityName: > > org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention > > Entity: 3 === Text: Autoimmune === Polarity: 1 === Subject: patient > > === > > EntityName: > > org.apache.ctakes.typesystem.type.textsem.SignSymptomMention > > Entity: 2 === Text: Autoimmune Disorders === Polarity: -1 === > > Subject: > > patient === EntityName: > > org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention > > Entity: 3 === Text: Autoimmune === Polarity: 1 === Subject: patient > > === > > EntityName: > > org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
