Peter, 1) This is loaded by cTAKES, you don't need to manually create the database. 2) I can't see the highlights here, but I think that file should be okay as created by the GUI. 3) I think the parameter name to configure your dictionary location is LookupXml instead of DictionaryDescriptor
Jeff On Thu, Jul 30, 2020 at 6:49 PM Peter Abramowitsch <pabramowit...@gmail.com> wrote: > A couple of questions about installing a custom dictionary in lookup fast. > I hope I'm not too far off the track. > > I've used the dictionary creator with a UMLS install to create the > dictionary script, prop file, and xml file in my ctakes resources tree > > 1. Do I have to manually run this script to execute all its SQL statements > into hsqldb or is this executed by the cTakes program when it encounters > the XML descriptor? > If manual running is needed, are there instructions on how and where to > load the script? > > 2. The xml file generated by the dictionary creator contains lines with > duplicate names-- see yellow highlight. Is this correct? > <name>my_dict_v1Terms</name> > <property key="jdbcUrl" > value="jdbc:hsqldb:file:resources/org/apache/ctakes/dictionary/lookup/fast/ > my_dict_v1/my_dict_v1"/> > > 3. Try as I might I cannot get ctakes to load anything other than > sno_rx. I'm using a piper file with an entry looking like > .... > add org.apache.ctakes.dictionary.lookup2.ae.OverlapJCasTermAnnotator > > DictionaryDescriptor=org/apache/ctakes/dictionary/lookup/fast/my_dict_v1.xml > .... > Not sure if they're looked at any more but I also changed these xml files > under desc as well. > > > > desc/ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsOverlapLookupAnnotator.xml > > > desc/ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml > > But I can't even get it to fail to try to load mine. > my log looks like this > > 30 Jul 2020 15:43:37 INFO AbstractJCasTermAnnotator - Exclusion > tagset loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD > VBG VBN VBP VBZ WDT WP WPS WRB > 30 Jul 2020 15:43:37 INFO AbstractJCasTermAnnotator - Using minimum > term text span: 3 > 30 Jul 2020 15:43:37 INFO AbstractJCasTermAnnotator - Using > Dictionary Descriptor: org/apache/ctakes/dictionary/lookup/fast/ > sno_rx_16ab.xml > > > Any suggestions? > > Regards, Peter >
