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Once you have an account you might be able to edit ctakes pages. If you don't see an "edit" option near the central ish - top ish part of a page, send me your user id and I will see if I can give you write permission. Thanks, Sean ________________________________________ From: Jeffrey Miller <jeff...@gmail.com> Sent: Friday, July 31, 2020 12:44 PM To: dev@ctakes.apache.org Subject: Re: Problem trying to load a custom dictionary [EXTERNAL] [EXTERNAL] * External Email - Caution * How would I go about getting edit access to the Wiki (is that the preferred path)? On Fri, Jul 31, 2020 at 11:08 AM Peter Abramowitsch <pabramowit...@gmail.com> wrote: > Thank you Jeff and Gandhi for offers of help. I'm not trying to renege > on my offer, but as I have only done this once, I'm wondering if your > combined experience makes it much more appropriate for one of you to do > this documentation and I do a review rather than the other way round. -- > Especially if Jeff has actually written up the basis for the enhancement. > > However I'm willing to give it a shot if neither of you wants to take the > reins > > Peter > > > > On Fri, Jul 31, 2020 at 7:39 AM Jeffrey Miller <jeff...@gmail.com> wrote: > > > I can help with this as well. I have some documentation that I have > written > > for myself that would probably be useful. I've tried to keep a list of > > useful forum posts that contain information that could probably be more > > prominently displayed on the wiki. > > > > On Fri, Jul 31, 2020 at 10:34 AM gandhi rajan <gandhiraja...@gmail.com> > > wrote: > > > > > Hi Peter, > > > > > > We can work together on this if you are interested. > > > > > > On Fri, Jul 31, 2020 at 7:44 PM Peter Abramowitsch < > > > pabramowit...@gmail.com> > > > wrote: > > > > > > > I could do it while the experience is fresh, although I only know the > > > happy > > > > path and not the deeper details in this area of the suite > > > > If you want me to, let me know how to get editing privileges on the > > Wiki. > > > > > > > > Peter > > > > > > > > On Fri, Jul 31, 2020 at 4:28 AM Finan, Sean < > > > > sean.fi...@childrens.harvard.edu> wrote: > > > > > > > > > Obviously Jeff is correct in all of his answers. Thank you Jeff! > > > > > > > > > > One comment: DictionaryDescriptor is a deprecated parameter name > that > > > is > > > > > picked up by the piper creator when it inspects the code. > However, I > > > am > > > > > not sure why the deprecated parameter name isn't working ... > > > > > > > > > > The wiki needs additional and more thorough information. If > anybody > > > can > > > > > volunteer to work on it I (and future users) would really > appreciate > > > it! > > > > > > > > > > Thanks, > > > > > Sean > > > > > > > > > > > > > > > ________________________________________ > > > > > From: Peter Abramowitsch <pabramowit...@gmail.com> > > > > > Sent: Thursday, July 30, 2020 9:02 PM > > > > > To: dev@ctakes.apache.org > > > > > Subject: Re: Problem trying to load a custom dictionary [EXTERNAL] > > > > > > > > > > * External Email - Caution * > > > > > > > > > > > > > > > Thanks Jeff > > > > > > > > > > That worked! > > > > > > > > > > Seems like something that should get fixed in the PiperCreator and > in > > > the > > > > > documentation. > > > > > > > > > > With a life of assuming that every mistake is my own error, the > last > > > > thing > > > > > I would have expected was > > > > > a generator of incorrect params. > > > > > > > > > > Peter > > > > > > > > > > On Thu, Jul 30, 2020 at 4:59 PM Jeffrey Miller <jeff...@gmail.com> > > > > wrote: > > > > > > > > > > > Peter, > > > > > > > > > > > > 1) This is loaded by cTAKES, you don't need to manually create > the > > > > > > database. > > > > > > 2) I can't see the highlights here, but I think that file should > be > > > > okay > > > > > as > > > > > > created by the GUI. > > > > > > 3) I think the parameter name to configure your dictionary > location > > > is > > > > > > LookupXml instead of DictionaryDescriptor > > > > > > > > > > > > Jeff > > > > > > > > > > > > On Thu, Jul 30, 2020 at 6:49 PM Peter Abramowitsch < > > > > > > pabramowit...@gmail.com> > > > > > > wrote: > > > > > > > > > > > > > A couple of questions about installing a custom dictionary in > > > lookup > > > > > > fast. > > > > > > > I hope I'm not too far off the track. > > > > > > > > > > > > > > I've used the dictionary creator with a UMLS install to create > > the > > > > > > > dictionary script, prop file, and xml file in my ctakes > resources > > > > tree > > > > > > > > > > > > > > 1. Do I have to manually run this script to execute all its > SQL > > > > > > statements > > > > > > > into hsqldb or is this executed by the cTakes program when it > > > > > encounters > > > > > > > the XML descriptor? > > > > > > > If manual running is needed, are there instructions on how and > > > where > > > > to > > > > > > > load the script? > > > > > > > > > > > > > > 2. The xml file generated by the dictionary creator contains > > lines > > > > > with > > > > > > > duplicate names-- see yellow highlight. Is this correct? > > > > > > > <name>my_dict_v1Terms</name> > > > > > > > <property key="jdbcUrl" > > > > > > > > > > > > > > > > > > > > > > > > > > > > value="jdbc:hsqldb:file:resources/org/apache/ctakes/dictionary/lookup/fast/ > > > > > > > my_dict_v1/my_dict_v1"/> > > > > > > > > > > > > > > 3. Try as I might I cannot get ctakes to load anything other > > than > > > > > > > sno_rx. I'm using a piper file with an entry looking like > > > > > > > .... > > > > > > > add org.apache.ctakes.dictionary.lookup2.ae > > > > > > .OverlapJCasTermAnnotator > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > DictionaryDescriptor=org/apache/ctakes/dictionary/lookup/fast/my_dict_v1.xml > > > > > > > .... > > > > > > > Not sure if they're looked at any more but I also changed these > > xml > > > > > files > > > > > > > under desc as well. > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > desc/ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsOverlapLookupAnnotator.xml > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > desc/ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml > > > > > > > > > > > > > > But I can't even get it to fail to try to load mine. > > > > > > > my log looks like this > > > > > > > > > > > > > > 30 Jul 2020 15:43:37 INFO AbstractJCasTermAnnotator - > > > > Exclusion > > > > > > > tagset loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP > TO > > > VB > > > > > VBD > > > > > > > VBG VBN VBP VBZ WDT WP WPS WRB > > > > > > > 30 Jul 2020 15:43:37 INFO AbstractJCasTermAnnotator - > > Using > > > > > > minimum > > > > > > > term text span: 3 > > > > > > > 30 Jul 2020 15:43:37 INFO AbstractJCasTermAnnotator - > > Using > > > > > > > Dictionary Descriptor: > org/apache/ctakes/dictionary/lookup/fast/ > > > > > > > sno_rx_16ab.xml > > > > > > > > > > > > > > > > > > > > > Any suggestions? > > > > > > > > > > > > > > Regards, Peter > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > -- > > > Regards, > > > Gandhi > > > > > > "The best way to find urself is to lose urself in the service of others > > > !!!" > > > > > >
