Thanks Kos, Please see https://issues.apache.org/jira/browse/OODT-759 We will track it there from now on and determine what needs to be done.
On Wed, Oct 8, 2014 at 8:55 PM, Konstantinos Mavrommatis < kmavromma...@celgene.com> wrote: > Here is the offending file before escape: > > > > <cas:metadata xmlns:cas="http://oodt.jpl.nasa.gov/1.0/cas";> > <keyval> > <key>derived_from</key> > > <val>/gpfs/celgene/reference/v1/Homo-sapiens/GRCh37.p12/SailFishIndex</val> > > <val>/gpfs/archive/RED/DA0000072/RNA-Seq/RawData/FastqFiles/HM1_1_R1.fastq.gz</val> > > <val>/gpfs/archive/RED/DA0000072/RNA-Seq/RawData/FastqFiles/HM1_1_R2.fastq.gz</val> > </keyval> > <keyval> > <key>FilePath</key> > > <val>/gpfs/archive/RED/DA0000072/RNA-Seq/Processed/Sailfish-transcriptCounts/HM1_1.Sailfish.sfish</val> > </keyval> > <keyval> > <key>start_execution</key> > <val>Tue Oct 7 20:49:12 2014</val> > </keyval> > <keyval> > <key>ingest_user</key> > <val>kmavrommatis</val> > </keyval> > <keyval> > <key>end_execution</key> > <val>Tue Oct 7 21:03:47 2014</val> > </keyval> > <keyval> > <key>run_user</key> > <val>kmavrommatis</val> > </keyval> > <keyval> > <key>file_host</key> > <val>ussdgsphpccas02</val> > </keyval> > <keyval> > <key>generator</key> > <val>sailfish</val> > </keyval> > <keyval> > <key>run_host</key> > <val>ussdgsphpccmp01</val> > </keyval> > <keyval> > <key>sample_id</key> > <val>2569</val> > </keyval> > <keyval> > <key>generator_version</key> > <val>sailfish[0.6.3]</val> > </keyval> > <keyval> > <key>ProductType</key> > <val>GenericFile</val> > </keyval> > <keyval> > <key>analysis_task</key> > <val>38</val> > </keyval> > <keyval> > <key>generator_string</key> > <val>"sailfish quant --index > /gpfs/celgene/reference/v1/Homo-sapiens/GRCh37.p12/SailFishIndex --libtype > 'T=PE:O=><:S=AS' -1 <(gunzip -c > /gpfs/archive/RED/DA0000072/RNA-Seq/RawData/FastqFiles/HM1_1_R1.fastq.gz) > -2 <(gunzip -c > /gpfs/archive/RED/DA0000072/RNA-Seq/RawData/FastqFiles/HM1_1_R2.fastq.gz) > -o > /gpfs/archive/RED/DA0000072/RNA-Seq/Processed/Sailfish-transcriptCounts/HM1_1.Sailfish.txt > -p 8 --no_bias_correct "</val> > </keyval> > </cas:metadata> > > ********************************************************* > THIS ELECTRONIC MAIL MESSAGE AND ANY ATTACHMENT IS > CONFIDENTIAL AND MAY CONTAIN LEGALLY PRIVILEGED > INFORMATION INTENDED ONLY FOR THE USE OF THE INDIVIDUAL > OR INDIVIDUALS NAMED ABOVE. > If the reader is not the intended recipient, or the > employee or agent responsible to deliver it to the > intended recipient, you are hereby notified that any > dissemination, distribution or copying of this > communication is strictly prohibited. If you have > received this communication in error, please reply to the > sender to notify us of the error and delete the original > message. Thank You. > -- *Lewis*
