This is indeed a little better but still creating a problem:
CCLD opal_wrapper
../../../opal/.libs/libopen-pal.a(opal_progress.o): In function
`_opal_progress_unregister':
/autofs/nccs-svm1_sw/gvh/src/openmpi-2.0.1rc2/opal/runtime/opal_progress.c:459:
undefined reference to `opal_atomic_swap_64'
../../../opal/.libs/libopen-pal.a(opal_progress.o): In function
`_opal_progress_register':
/autofs/nccs-svm1_sw/gvh/src/openmpi-2.0.1rc2/opal/runtime/opal_progress.c:398:
undefined reference to `opal_atomic_swap_64'
make[2]: *** [opal_wrapper] Error 2
make[2]: Leaving directory
`/autofs/nccs-svm1_sw/gvh/src/openmpi-2.0.1rc2/opal/tools/wrappers'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/autofs/nccs-svm1_sw/gvh/src/openmpi-2.0.1rc2/opal'
make: *** [all-recursive] Error 1
$ nm libopen-pal.a | grep atomic
U opal_atomic_cmpset_64
0000000000000ab0 t opal_atomic_cmpset_ptr
U opal_atomic_wmb
0000000000000950 t opal_lifo_push_atomic
U opal_atomic_cmpset_acq_32
00000000000003d0 t opal_atomic_lock
0000000000000450 t opal_atomic_unlock
U opal_atomic_wmb
U opal_atomic_ll_64
U opal_atomic_sc_64
U opal_atomic_wmb
0000000000001010 t opal_lifo_pop_atomic
U opal_atomic_cmpset_acq_32
00000000000004b0 t opal_atomic_init
00000000000004e0 t opal_atomic_lock
U opal_atomic_mb
0000000000000560 t opal_atomic_unlock
U opal_atomic_wmb
U opal_atomic_add_32
U opal_atomic_cmpset_acq_32
0000000000000820 t opal_atomic_init
0000000000000850 t opal_atomic_lock
U opal_atomic_sub_32
U opal_atomic_swap_64
00000000000008d0 t opal_atomic_unlock
U opal_atomic_wmb
0000000000000130 t opal_atomic_init
atomic-asm.o:
0000000000000138 T opal_atomic_add_32
0000000000000018 T opal_atomic_cmpset_32
00000000000000c4 T opal_atomic_cmpset_64
000000000000003c T opal_atomic_cmpset_acq_32
00000000000000e8 T opal_atomic_cmpset_acq_64
0000000000000070 T opal_atomic_cmpset_rel_32
0000000000000110 T opal_atomic_cmpset_rel_64
0000000000000000 T opal_atomic_mb
0000000000000008 T opal_atomic_rmb
0000000000000150 T opal_atomic_sub_32
0000000000000010 T opal_atomic_wmb
0000000000002280 t mca_base_pvar_is_atomic
U opal_atomic_ll_64
U opal_atomic_sc_64
U opal_atomic_wmb
0000000000000900 t opal_lifo_pop_atomic
> On Sep 1, 2016, at 3:16 PM, Jeff Squyres (jsquyres) <jsquy...@cisco.com>
> wrote:
>
> Can you try the latest v2.0.1 nightly snapshot tarball?
>
>
>> On Sep 1, 2016, at 2:56 PM, Vallee, Geoffroy R. <valle...@ornl.gov> wrote:
>>
>> Hello,
>>
>> I get the following problem when we compile OpenMPI-2.0.0 (it seems to be
>> specific to 2.x; the problem did not appear with 1.10.x) with PGI:
>>
>> CCLD opal_wrapper
>> ../../../opal/.libs/libopen-pal.so: undefined reference to
>> `opal_atomic_sc_64'
>> ../../../opal/.libs/libopen-pal.so: undefined reference to
>> `opal_atomic_ll_64'
>> ../../../opal/.libs/libopen-pal.so: undefined reference to
>> `opal_atomic_swap_64'
>> make[1]: *** [opal_wrapper] Error 2
>>
>> It is a little for me to pin point the exact problem but i can see the
>> following:
>>
>> $ nm ./.libs/libopen-pal.so | grep atomic
>> 0000000000026320 t 00000017.plt_call.opal_atomic_add_32
>> 0000000000026250 t 00000017.plt_call.opal_atomic_cmpset_32
>> 0000000000026780 t 00000017.plt_call.opal_atomic_cmpset_64
>> 00000000000280c0 t 00000017.plt_call.opal_atomic_cmpset_acq_32
>> 0000000000028ae0 t 00000017.plt_call.opal_atomic_ll_64
>> 0000000000027fe0 t 00000017.plt_call.opal_atomic_mb
>> 0000000000027d50 t 00000017.plt_call.opal_atomic_rmb
>> 0000000000028500 t 00000017.plt_call.opal_atomic_sc_64
>> 0000000000027670 t 00000017.plt_call.opal_atomic_sub_32
>> 0000000000026da0 t 00000017.plt_call.opal_atomic_swap_64
>> 0000000000027050 t 00000017.plt_call.opal_atomic_wmb
>> 000000000005e6a0 t mca_base_pvar_is_atomic
>> 000000000004715c T opal_atomic_add_32
>> 000000000004703c T opal_atomic_cmpset_32
>> 00000000000470e8 T opal_atomic_cmpset_64
>> 0000000000047060 T opal_atomic_cmpset_acq_32
>> 000000000004710c T opal_atomic_cmpset_acq_64
>> 000000000002a610 t opal_atomic_cmpset_ptr
>> 0000000000047094 T opal_atomic_cmpset_rel_32
>> 0000000000047134 T opal_atomic_cmpset_rel_64
>> 0000000000032cc0 t opal_atomic_init
>> 0000000000033980 t opal_atomic_init
>> 00000000000396a0 t opal_atomic_init
>> U opal_atomic_ll_64
>> 000000000002e460 t opal_atomic_lock
>> 0000000000032cf0 t opal_atomic_lock
>> 00000000000339b0 t opal_atomic_lock
>> 0000000000047024 T opal_atomic_mb
>> 000000000004702c T opal_atomic_rmb
>> U opal_atomic_sc_64
>> 0000000000047174 T opal_atomic_sub_32
>> U opal_atomic_swap_64
>> 000000000002e4e0 t opal_atomic_unlock
>> 0000000000032d70 t opal_atomic_unlock
>> 0000000000033a30 t opal_atomic_unlock
>> 0000000000047034 T opal_atomic_wmb
>> 00000000000324d0 t opal_lifo_pop_atomic
>> 00000000000cc260 t opal_lifo_pop_atomic
>> 000000000002a490 t opal_lifo_push_atomic
>>
>> Any idea of how to fix the problem?
>>
>> Thanks,
>> _______________________________________________
>> devel mailing list
>> devel@lists.open-mpi.org
>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel
>
>
> --
> Jeff Squyres
> jsquy...@cisco.com
> For corporate legal information go to:
> http://www.cisco.com/web/about/doing_business/legal/cri/
>
> _______________________________________________
> devel mailing list
> devel@lists.open-mpi.org
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>
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