I just tried the fix and i can confirm that it fixes the problem. :) Thanks!!!
> On Sep 2, 2016, at 6:18 AM, Jeff Squyres (jsquyres) <jsquy...@cisco.com> > wrote: > > Issue filed at https://github.com/open-mpi/ompi/issues/2044. > > I asked Nathan and Sylvain to have a look. > > >> On Sep 1, 2016, at 9:20 PM, Paul Hargrove <phhargr...@lbl.gov> wrote: >> >> I failed to get PGI 16.x working at all (licence issue, I think). >> So, I can neither confirm nor refute Geoffroy's reported problems. >> >> -Paul >> >> On Thu, Sep 1, 2016 at 6:15 PM, Vallee, Geoffroy R. <valle...@ornl.gov> >> wrote: >> Interesting, I am having the problem with both 16.5 and 16.7. >> >> My 2 cents, >> >>> On Sep 1, 2016, at 8:25 PM, Paul Hargrove <phhargr...@lbl.gov> wrote: >>> >>> FWIW I have not seen problems when testing the 2.0.1rc2 w/ PGI versions >>> 12.10, 13.9, 14.3 or 15.9. >>> >>> I am going to test 2.0.2.rc3 ASAP and try to get PGI 16.4 coverage added in >>> >>> -Paul >>> >>> On Thu, Sep 1, 2016 at 12:48 PM, Jeff Squyres (jsquyres) >>> <jsquy...@cisco.com> wrote: >>> Please send all the information on the build support page and open an issue >>> at github. Thanks. >>> >>> >>>> On Sep 1, 2016, at 3:41 PM, Vallee, Geoffroy R. <valle...@ornl.gov> wrote: >>>> >>>> This is indeed a little better but still creating a problem: >>>> >>>> CCLD opal_wrapper >>>> ../../../opal/.libs/libopen-pal.a(opal_progress.o): In function >>>> `_opal_progress_unregister': >>>> /autofs/nccs-svm1_sw/gvh/src/openmpi-2.0.1rc2/opal/runtime/opal_progress.c:459: >>>> undefined reference to `opal_atomic_swap_64' >>>> ../../../opal/.libs/libopen-pal.a(opal_progress.o): In function >>>> `_opal_progress_register': >>>> /autofs/nccs-svm1_sw/gvh/src/openmpi-2.0.1rc2/opal/runtime/opal_progress.c:398: >>>> undefined reference to `opal_atomic_swap_64' >>>> make[2]: *** [opal_wrapper] Error 2 >>>> make[2]: Leaving directory >>>> `/autofs/nccs-svm1_sw/gvh/src/openmpi-2.0.1rc2/opal/tools/wrappers' >>>> make[1]: *** [all-recursive] Error 1 >>>> make[1]: Leaving directory >>>> `/autofs/nccs-svm1_sw/gvh/src/openmpi-2.0.1rc2/opal' >>>> make: *** [all-recursive] Error 1 >>>> >>>> $ nm libopen-pal.a | grep atomic >>>> U opal_atomic_cmpset_64 >>>> 0000000000000ab0 t opal_atomic_cmpset_ptr >>>> U opal_atomic_wmb >>>> 0000000000000950 t opal_lifo_push_atomic >>>> U opal_atomic_cmpset_acq_32 >>>> 00000000000003d0 t opal_atomic_lock >>>> 0000000000000450 t opal_atomic_unlock >>>> U opal_atomic_wmb >>>> U opal_atomic_ll_64 >>>> U opal_atomic_sc_64 >>>> U opal_atomic_wmb >>>> 0000000000001010 t opal_lifo_pop_atomic >>>> U opal_atomic_cmpset_acq_32 >>>> 00000000000004b0 t opal_atomic_init >>>> 00000000000004e0 t opal_atomic_lock >>>> U opal_atomic_mb >>>> 0000000000000560 t opal_atomic_unlock >>>> U opal_atomic_wmb >>>> U opal_atomic_add_32 >>>> U opal_atomic_cmpset_acq_32 >>>> 0000000000000820 t opal_atomic_init >>>> 0000000000000850 t opal_atomic_lock >>>> U opal_atomic_sub_32 >>>> U opal_atomic_swap_64 >>>> 00000000000008d0 t opal_atomic_unlock >>>> U opal_atomic_wmb >>>> 0000000000000130 t opal_atomic_init >>>> atomic-asm.o: >>>> 0000000000000138 T opal_atomic_add_32 >>>> 0000000000000018 T opal_atomic_cmpset_32 >>>> 00000000000000c4 T opal_atomic_cmpset_64 >>>> 000000000000003c T opal_atomic_cmpset_acq_32 >>>> 00000000000000e8 T opal_atomic_cmpset_acq_64 >>>> 0000000000000070 T opal_atomic_cmpset_rel_32 >>>> 0000000000000110 T opal_atomic_cmpset_rel_64 >>>> 0000000000000000 T opal_atomic_mb >>>> 0000000000000008 T opal_atomic_rmb >>>> 0000000000000150 T opal_atomic_sub_32 >>>> 0000000000000010 T opal_atomic_wmb >>>> 0000000000002280 t mca_base_pvar_is_atomic >>>> U opal_atomic_ll_64 >>>> U opal_atomic_sc_64 >>>> U opal_atomic_wmb >>>> 0000000000000900 t opal_lifo_pop_atomic >>>> >>>>> On Sep 1, 2016, at 3:16 PM, Jeff Squyres (jsquyres) <jsquy...@cisco.com> >>>>> wrote: >>>>> >>>>> Can you try the latest v2.0.1 nightly snapshot tarball? >>>>> >>>>> >>>>>> On Sep 1, 2016, at 2:56 PM, Vallee, Geoffroy R. <valle...@ornl.gov> >>>>>> wrote: >>>>>> >>>>>> Hello, >>>>>> >>>>>> I get the following problem when we compile OpenMPI-2.0.0 (it seems to >>>>>> be specific to 2.x; the problem did not appear with 1.10.x) with PGI: >>>>>> >>>>>> CCLD opal_wrapper >>>>>> ../../../opal/.libs/libopen-pal.so: undefined reference to >>>>>> `opal_atomic_sc_64' >>>>>> ../../../opal/.libs/libopen-pal.so: undefined reference to >>>>>> `opal_atomic_ll_64' >>>>>> ../../../opal/.libs/libopen-pal.so: undefined reference to >>>>>> `opal_atomic_swap_64' >>>>>> make[1]: *** [opal_wrapper] Error 2 >>>>>> >>>>>> It is a little for me to pin point the exact problem but i can see the >>>>>> following: >>>>>> >>>>>> $ nm ./.libs/libopen-pal.so | grep atomic >>>>>> 0000000000026320 t 00000017.plt_call.opal_atomic_add_32 >>>>>> 0000000000026250 t 00000017.plt_call.opal_atomic_cmpset_32 >>>>>> 0000000000026780 t 00000017.plt_call.opal_atomic_cmpset_64 >>>>>> 00000000000280c0 t 00000017.plt_call.opal_atomic_cmpset_acq_32 >>>>>> 0000000000028ae0 t 00000017.plt_call.opal_atomic_ll_64 >>>>>> 0000000000027fe0 t 00000017.plt_call.opal_atomic_mb >>>>>> 0000000000027d50 t 00000017.plt_call.opal_atomic_rmb >>>>>> 0000000000028500 t 00000017.plt_call.opal_atomic_sc_64 >>>>>> 0000000000027670 t 00000017.plt_call.opal_atomic_sub_32 >>>>>> 0000000000026da0 t 00000017.plt_call.opal_atomic_swap_64 >>>>>> 0000000000027050 t 00000017.plt_call.opal_atomic_wmb >>>>>> 000000000005e6a0 t mca_base_pvar_is_atomic >>>>>> 000000000004715c T opal_atomic_add_32 >>>>>> 000000000004703c T opal_atomic_cmpset_32 >>>>>> 00000000000470e8 T opal_atomic_cmpset_64 >>>>>> 0000000000047060 T opal_atomic_cmpset_acq_32 >>>>>> 000000000004710c T opal_atomic_cmpset_acq_64 >>>>>> 000000000002a610 t opal_atomic_cmpset_ptr >>>>>> 0000000000047094 T opal_atomic_cmpset_rel_32 >>>>>> 0000000000047134 T opal_atomic_cmpset_rel_64 >>>>>> 0000000000032cc0 t opal_atomic_init >>>>>> 0000000000033980 t opal_atomic_init >>>>>> 00000000000396a0 t opal_atomic_init >>>>>> U opal_atomic_ll_64 >>>>>> 000000000002e460 t opal_atomic_lock >>>>>> 0000000000032cf0 t opal_atomic_lock >>>>>> 00000000000339b0 t opal_atomic_lock >>>>>> 0000000000047024 T opal_atomic_mb >>>>>> 000000000004702c T opal_atomic_rmb >>>>>> U opal_atomic_sc_64 >>>>>> 0000000000047174 T opal_atomic_sub_32 >>>>>> U opal_atomic_swap_64 >>>>>> 000000000002e4e0 t opal_atomic_unlock >>>>>> 0000000000032d70 t opal_atomic_unlock >>>>>> 0000000000033a30 t opal_atomic_unlock >>>>>> 0000000000047034 T opal_atomic_wmb >>>>>> 00000000000324d0 t opal_lifo_pop_atomic >>>>>> 00000000000cc260 t opal_lifo_pop_atomic >>>>>> 000000000002a490 t opal_lifo_push_atomic >>>>>> >>>>>> Any idea of how to fix the problem? >>>>>> >>>>>> Thanks, >>>>>> _______________________________________________ >>>>>> devel mailing list >>>>>> devel@lists.open-mpi.org >>>>>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >>>>> >>>>> >>>>> -- >>>>> Jeff Squyres >>>>> jsquy...@cisco.com >>>>> For corporate legal information go to: >>>>> http://www.cisco.com/web/about/doing_business/legal/cri/ >>>>> >>>>> _______________________________________________ >>>>> devel mailing list >>>>> devel@lists.open-mpi.org >>>>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >>>>> >>>> >>>> _______________________________________________ >>>> devel mailing list >>>> devel@lists.open-mpi.org >>>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >>> >>> >>> -- >>> Jeff Squyres >>> jsquy...@cisco.com >>> For corporate legal information go to: >>> http://www.cisco.com/web/about/doing_business/legal/cri/ >>> >>> _______________________________________________ >>> devel mailing list >>> devel@lists.open-mpi.org >>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >>> >>> >>> >>> -- >>> Paul H. Hargrove phhargr...@lbl.gov >>> Computer Languages & Systems Software (CLaSS) Group >>> Computer Science Department Tel: +1-510-495-2352 >>> Lawrence Berkeley National Laboratory Fax: +1-510-486-6900 >>> _______________________________________________ >>> devel mailing list >>> devel@lists.open-mpi.org >>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >> >> _______________________________________________ >> devel mailing list >> devel@lists.open-mpi.org >> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >> >> >> >> -- >> Paul H. Hargrove phhargr...@lbl.gov >> Computer Languages & Systems Software (CLaSS) Group >> Computer Science Department Tel: +1-510-495-2352 >> Lawrence Berkeley National Laboratory Fax: +1-510-486-6900 >> _______________________________________________ >> devel mailing list >> devel@lists.open-mpi.org >> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel > > > -- > Jeff Squyres > jsquy...@cisco.com > For corporate legal information go to: > http://www.cisco.com/web/about/doing_business/legal/cri/ > > _______________________________________________ > devel mailing list > devel@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/devel > _______________________________________________ devel mailing list devel@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/devel
