Thanks for reporting this! Glad the problem is fixed. We will get this into 2.0.2.
-Nathan > On Sep 7, 2016, at 9:39 AM, Vallee, Geoffroy R. <valle...@ornl.gov> wrote: > > I just tried the fix and i can confirm that it fixes the problem. :) > > Thanks!!! > >> On Sep 2, 2016, at 6:18 AM, Jeff Squyres (jsquyres) <jsquy...@cisco.com> >> wrote: >> >> Issue filed at https://github.com/open-mpi/ompi/issues/2044. >> >> I asked Nathan and Sylvain to have a look. >> >> >>> On Sep 1, 2016, at 9:20 PM, Paul Hargrove <phhargr...@lbl.gov> wrote: >>> >>> I failed to get PGI 16.x working at all (licence issue, I think). >>> So, I can neither confirm nor refute Geoffroy's reported problems. >>> >>> -Paul >>> >>> On Thu, Sep 1, 2016 at 6:15 PM, Vallee, Geoffroy R. <valle...@ornl.gov> >>> wrote: >>> Interesting, I am having the problem with both 16.5 and 16.7. >>> >>> My 2 cents, >>> >>>> On Sep 1, 2016, at 8:25 PM, Paul Hargrove <phhargr...@lbl.gov> wrote: >>>> >>>> FWIW I have not seen problems when testing the 2.0.1rc2 w/ PGI versions >>>> 12.10, 13.9, 14.3 or 15.9. >>>> >>>> I am going to test 2.0.2.rc3 ASAP and try to get PGI 16.4 coverage added in >>>> >>>> -Paul >>>> >>>> On Thu, Sep 1, 2016 at 12:48 PM, Jeff Squyres (jsquyres) >>>> <jsquy...@cisco.com> wrote: >>>> Please send all the information on the build support page and open an >>>> issue at github. Thanks. >>>> >>>> >>>>> On Sep 1, 2016, at 3:41 PM, Vallee, Geoffroy R. <valle...@ornl.gov> wrote: >>>>> >>>>> This is indeed a little better but still creating a problem: >>>>> >>>>> CCLD opal_wrapper >>>>> ../../../opal/.libs/libopen-pal.a(opal_progress.o): In function >>>>> `_opal_progress_unregister': >>>>> /autofs/nccs-svm1_sw/gvh/src/openmpi-2.0.1rc2/opal/runtime/opal_progress.c:459: >>>>> undefined reference to `opal_atomic_swap_64' >>>>> ../../../opal/.libs/libopen-pal.a(opal_progress.o): In function >>>>> `_opal_progress_register': >>>>> /autofs/nccs-svm1_sw/gvh/src/openmpi-2.0.1rc2/opal/runtime/opal_progress.c:398: >>>>> undefined reference to `opal_atomic_swap_64' >>>>> make[2]: *** [opal_wrapper] Error 2 >>>>> make[2]: Leaving directory >>>>> `/autofs/nccs-svm1_sw/gvh/src/openmpi-2.0.1rc2/opal/tools/wrappers' >>>>> make[1]: *** [all-recursive] Error 1 >>>>> make[1]: Leaving directory >>>>> `/autofs/nccs-svm1_sw/gvh/src/openmpi-2.0.1rc2/opal' >>>>> make: *** [all-recursive] Error 1 >>>>> >>>>> $ nm libopen-pal.a | grep atomic >>>>> U opal_atomic_cmpset_64 >>>>> 0000000000000ab0 t opal_atomic_cmpset_ptr >>>>> U opal_atomic_wmb >>>>> 0000000000000950 t opal_lifo_push_atomic >>>>> U opal_atomic_cmpset_acq_32 >>>>> 00000000000003d0 t opal_atomic_lock >>>>> 0000000000000450 t opal_atomic_unlock >>>>> U opal_atomic_wmb >>>>> U opal_atomic_ll_64 >>>>> U opal_atomic_sc_64 >>>>> U opal_atomic_wmb >>>>> 0000000000001010 t opal_lifo_pop_atomic >>>>> U opal_atomic_cmpset_acq_32 >>>>> 00000000000004b0 t opal_atomic_init >>>>> 00000000000004e0 t opal_atomic_lock >>>>> U opal_atomic_mb >>>>> 0000000000000560 t opal_atomic_unlock >>>>> U opal_atomic_wmb >>>>> U opal_atomic_add_32 >>>>> U opal_atomic_cmpset_acq_32 >>>>> 0000000000000820 t opal_atomic_init >>>>> 0000000000000850 t opal_atomic_lock >>>>> U opal_atomic_sub_32 >>>>> U opal_atomic_swap_64 >>>>> 00000000000008d0 t opal_atomic_unlock >>>>> U opal_atomic_wmb >>>>> 0000000000000130 t opal_atomic_init >>>>> atomic-asm.o: >>>>> 0000000000000138 T opal_atomic_add_32 >>>>> 0000000000000018 T opal_atomic_cmpset_32 >>>>> 00000000000000c4 T opal_atomic_cmpset_64 >>>>> 000000000000003c T opal_atomic_cmpset_acq_32 >>>>> 00000000000000e8 T opal_atomic_cmpset_acq_64 >>>>> 0000000000000070 T opal_atomic_cmpset_rel_32 >>>>> 0000000000000110 T opal_atomic_cmpset_rel_64 >>>>> 0000000000000000 T opal_atomic_mb >>>>> 0000000000000008 T opal_atomic_rmb >>>>> 0000000000000150 T opal_atomic_sub_32 >>>>> 0000000000000010 T opal_atomic_wmb >>>>> 0000000000002280 t mca_base_pvar_is_atomic >>>>> U opal_atomic_ll_64 >>>>> U opal_atomic_sc_64 >>>>> U opal_atomic_wmb >>>>> 0000000000000900 t opal_lifo_pop_atomic >>>>> >>>>>> On Sep 1, 2016, at 3:16 PM, Jeff Squyres (jsquyres) <jsquy...@cisco.com> >>>>>> wrote: >>>>>> >>>>>> Can you try the latest v2.0.1 nightly snapshot tarball? >>>>>> >>>>>> >>>>>>> On Sep 1, 2016, at 2:56 PM, Vallee, Geoffroy R. <valle...@ornl.gov> >>>>>>> wrote: >>>>>>> >>>>>>> Hello, >>>>>>> >>>>>>> I get the following problem when we compile OpenMPI-2.0.0 (it seems to >>>>>>> be specific to 2.x; the problem did not appear with 1.10.x) with PGI: >>>>>>> >>>>>>> CCLD opal_wrapper >>>>>>> ../../../opal/.libs/libopen-pal.so: undefined reference to >>>>>>> `opal_atomic_sc_64' >>>>>>> ../../../opal/.libs/libopen-pal.so: undefined reference to >>>>>>> `opal_atomic_ll_64' >>>>>>> ../../../opal/.libs/libopen-pal.so: undefined reference to >>>>>>> `opal_atomic_swap_64' >>>>>>> make[1]: *** [opal_wrapper] Error 2 >>>>>>> >>>>>>> It is a little for me to pin point the exact problem but i can see the >>>>>>> following: >>>>>>> >>>>>>> $ nm ./.libs/libopen-pal.so | grep atomic >>>>>>> 0000000000026320 t 00000017.plt_call.opal_atomic_add_32 >>>>>>> 0000000000026250 t 00000017.plt_call.opal_atomic_cmpset_32 >>>>>>> 0000000000026780 t 00000017.plt_call.opal_atomic_cmpset_64 >>>>>>> 00000000000280c0 t 00000017.plt_call.opal_atomic_cmpset_acq_32 >>>>>>> 0000000000028ae0 t 00000017.plt_call.opal_atomic_ll_64 >>>>>>> 0000000000027fe0 t 00000017.plt_call.opal_atomic_mb >>>>>>> 0000000000027d50 t 00000017.plt_call.opal_atomic_rmb >>>>>>> 0000000000028500 t 00000017.plt_call.opal_atomic_sc_64 >>>>>>> 0000000000027670 t 00000017.plt_call.opal_atomic_sub_32 >>>>>>> 0000000000026da0 t 00000017.plt_call.opal_atomic_swap_64 >>>>>>> 0000000000027050 t 00000017.plt_call.opal_atomic_wmb >>>>>>> 000000000005e6a0 t mca_base_pvar_is_atomic >>>>>>> 000000000004715c T opal_atomic_add_32 >>>>>>> 000000000004703c T opal_atomic_cmpset_32 >>>>>>> 00000000000470e8 T opal_atomic_cmpset_64 >>>>>>> 0000000000047060 T opal_atomic_cmpset_acq_32 >>>>>>> 000000000004710c T opal_atomic_cmpset_acq_64 >>>>>>> 000000000002a610 t opal_atomic_cmpset_ptr >>>>>>> 0000000000047094 T opal_atomic_cmpset_rel_32 >>>>>>> 0000000000047134 T opal_atomic_cmpset_rel_64 >>>>>>> 0000000000032cc0 t opal_atomic_init >>>>>>> 0000000000033980 t opal_atomic_init >>>>>>> 00000000000396a0 t opal_atomic_init >>>>>>> U opal_atomic_ll_64 >>>>>>> 000000000002e460 t opal_atomic_lock >>>>>>> 0000000000032cf0 t opal_atomic_lock >>>>>>> 00000000000339b0 t opal_atomic_lock >>>>>>> 0000000000047024 T opal_atomic_mb >>>>>>> 000000000004702c T opal_atomic_rmb >>>>>>> U opal_atomic_sc_64 >>>>>>> 0000000000047174 T opal_atomic_sub_32 >>>>>>> U opal_atomic_swap_64 >>>>>>> 000000000002e4e0 t opal_atomic_unlock >>>>>>> 0000000000032d70 t opal_atomic_unlock >>>>>>> 0000000000033a30 t opal_atomic_unlock >>>>>>> 0000000000047034 T opal_atomic_wmb >>>>>>> 00000000000324d0 t opal_lifo_pop_atomic >>>>>>> 00000000000cc260 t opal_lifo_pop_atomic >>>>>>> 000000000002a490 t opal_lifo_push_atomic >>>>>>> >>>>>>> Any idea of how to fix the problem? >>>>>>> >>>>>>> Thanks, >>>>>>> _______________________________________________ >>>>>>> devel mailing list >>>>>>> devel@lists.open-mpi.org >>>>>>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >>>>>> >>>>>> >>>>>> -- >>>>>> Jeff Squyres >>>>>> jsquy...@cisco.com >>>>>> For corporate legal information go to: >>>>>> http://www.cisco.com/web/about/doing_business/legal/cri/ >>>>>> >>>>>> _______________________________________________ >>>>>> devel mailing list >>>>>> devel@lists.open-mpi.org >>>>>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >>>>>> >>>>> >>>>> _______________________________________________ >>>>> devel mailing list >>>>> devel@lists.open-mpi.org >>>>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >>>> >>>> >>>> -- >>>> Jeff Squyres >>>> jsquy...@cisco.com >>>> For corporate legal information go to: >>>> http://www.cisco.com/web/about/doing_business/legal/cri/ >>>> >>>> _______________________________________________ >>>> devel mailing list >>>> devel@lists.open-mpi.org >>>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >>>> >>>> >>>> >>>> -- >>>> Paul H. Hargrove phhargr...@lbl.gov >>>> Computer Languages & Systems Software (CLaSS) Group >>>> Computer Science Department Tel: +1-510-495-2352 >>>> Lawrence Berkeley National Laboratory Fax: +1-510-486-6900 >>>> _______________________________________________ >>>> devel mailing list >>>> devel@lists.open-mpi.org >>>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >>> >>> _______________________________________________ >>> devel mailing list >>> devel@lists.open-mpi.org >>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >>> >>> >>> >>> -- >>> Paul H. Hargrove phhargr...@lbl.gov >>> Computer Languages & Systems Software (CLaSS) Group >>> Computer Science Department Tel: +1-510-495-2352 >>> Lawrence Berkeley National Laboratory Fax: +1-510-486-6900 >>> _______________________________________________ >>> devel mailing list >>> devel@lists.open-mpi.org >>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >> >> >> -- >> Jeff Squyres >> jsquy...@cisco.com >> For corporate legal information go to: >> http://www.cisco.com/web/about/doing_business/legal/cri/ >> >> _______________________________________________ >> devel mailing list >> devel@lists.open-mpi.org >> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >> > > _______________________________________________ > devel mailing list > devel@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/devel _______________________________________________ devel mailing list devel@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/devel
