Hi,
Unfortunately, the entire log file is 23MB. I am including the parts
of the log, I am assuming, is relevant :
== 2017-11-16 06:23:24,532 easyconfig.py:907 DEBUG Using subtoolchain
{'version': '2017a', 'name': 'intel'} for dep ncurses 6.0
== 2017-11-16 06:23:24,532 easyconfig.py:916 DEBUG Figured out toolchain to
use for dep ncurses 6.0: {'version': '2017a', 'name': 'intel'}
== 2017-11-16 06:23:24,532 easyconfig.py:1704 DEBUG Determining short
module name for {'external_module_metadata': {}, 'full_mod_name': None,
'toolchain': {'version': '2017a', 'name': 'intel'}, 'name': 'ncurses',
'dummy': False, 'short_mod_name': None, 'external_module': False,
'versionsuffix': '', 'version': '6.0', 'toolchain_inherited': True,
'hidden': False, 'build_only': False} (force_visible: False)
== 2017-11-16 06:23:24,533 easyconfig.py:1656 DEBUG No alternative software
name specified to determine module name with
== 2017-11-16 06:23:24,533 utilities.py:103 DEBUG Module name
ncurses/6.0-intel-2017a validated
== 2017-11-16 06:23:24,533 easyconfig.py:1706 DEBUG Obtained valid short
module name ncurses/6.0-intel-2017a
== 2017-11-16 06:23:24,533 easyconfig.py:1676 DEBUG Determining full module
name for {'external_module_metadata': {}, 'full_mod_name': None,
'toolchain': {'version': '2017a', 'name': 'intel'}, 'name': 'ncurses',
'dummy': False, 'short_mod_name': None, 'external_module': False,
'versionsuffix': '', 'version': '6.0', 'toolchain_inherited': True,
'hidden': False, 'build_only': False} (force_visible: False)
== 2017-11-16 06:23:24,533 easyconfig.py:1656 DEBUG No alternative software
name specified to determine module name with
== 2017-11-16 06:23:24,534 utilities.py:103 DEBUG Module name
ncurses/6.0-intel-2017a validated
== 2017-11-16 06:23:24,534 easyconfig.py:1683 DEBUG Obtained valid full
module name ncurses/6.0-intel-2017a
== 2017-11-16 06:23:24,534 easyconfig.py:467 INFO Validating easyconfig
== 2017-11-16 06:23:24,534 easyconfig.py:472 INFO Checking OS dependencies
== 2017-11-16 06:23:24,535 filetools.py:301 INFO Command rpm found at
/usr/bin/rpm
== 2017-11-16 06:23:24,535 run.py:132 DEBUG run_cmd: running cmd rpm -q
openssl-devel (in
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/o/OpenSSL)
== 2017-11-16 06:23:24,535 run.py:157 INFO running cmd: rpm -q
openssl-devel
== 2017-11-16 06:23:24,608 run.py:439 DEBUG cmd "rpm -q openssl-devel"
exited with exitcode 1 and output:
package openssl-devel is not installed
== 2017-11-16 06:23:24,608 run.py:483 DEBUG Using default regular
expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2017-11-16 06:23:24,610 filetools.py:309 WARNING Could not find command
'dpkg' (with permissions to read/execute it) in $PATH
(['/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.1/bin',
'/sNow/snow-tools/bin', '/sNow/snow-tools/sbin', '/usr/lib64/qt-3.3/bin',
'/usr/local/cuda-8.0/bin', '/sNow/snow-tools/bin', '/sNow/snow-tools/sbin',
'/usr/local/bin', '/usr/bin', '/bin', '/usr/local/games', '/usr/games',
'/opt/ibutils/bin'])
== 2017-11-16 06:23:24,610 filetools.py:301 INFO Command rpm found at
/usr/bin/rpm
== 2017-11-16 06:23:24,610 run.py:132 DEBUG run_cmd: running cmd rpm -q
libssl-dev (in
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/o/OpenSSL)
== 2017-11-16 06:23:24,610 run.py:157 INFO running cmd: rpm -q libssl-dev
== 2017-11-16 06:23:24,683 run.py:439 DEBUG cmd "rpm -q libssl-dev" exited
with exitcode 1 and output:
package libssl-dev is not installed
== 2017-11-16 06:23:24,683 run.py:483 DEBUG Using default regular
expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2017-11-16 06:23:24,684 filetools.py:309 WARNING Could not find command
'dpkg' (with permissions to read/execute it) in $PATH
(['/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.1/bin',
'/sNow/snow-tools/bin', '/sNow/snow-tools/sbin', '/usr/lib64/qt-3.3/bin',
'/usr/local/cuda-8.0/bin', '/sNow/snow-tools/bin', '/sNow/snow-tools/sbin',
'/usr/local/bin', '/usr/bin', '/bin', '/usr/local/games', '/usr/games',
'/opt/ibutils/bin'])
== 2017-11-16 06:23:24,684 filetools.py:301 INFO Command rpm found at
/usr/bin/rpm
== 2017-11-16 06:23:24,685 run.py:132 DEBUG run_cmd: running cmd rpm -q
libopenssl-devel (in
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/o/OpenSSL)
== 2017-11-16 06:23:24,685 run.py:157 INFO running cmd: rpm -q
libopenssl-devel
== 2017-11-16 06:23:24,746 run.py:439 DEBUG cmd "rpm -q libopenssl-devel"
exited with exitcode 1 and output:
package libopenssl-devel is not installed
== 2017-11-16 06:23:24,747 run.py:483 DEBUG Using default regular
expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2017-11-16 06:23:24,747 filetools.py:309 WARNING Could not find command
'dpkg' (with permissions to read/execute it) in $PATH
(['/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.1/bin',
'/sNow/snow-tools/bin', '/sNow/snow-tools/sbin', '/usr/lib64/qt-3.3/bin',
'/usr/local/cuda-8.0/bin', '/sNow/snow-tools/bin', '/sNow/snow-tools/sbin',
'/usr/local/bin', '/usr/bin', '/bin', '/usr/local/games', '/usr/games',
'/opt/ibutils/bin'])
== 2017-11-16 06:23:24,865 build_log.py:156 ERROR EasyBuild crashed with an
error (at
easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.1/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/vsc/utils/exceptions.py:124
in __init__): One or more OS dependencies were not found:
[('openssl-devel', 'libssl-dev', 'libopenssl-devel')] (at
easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.1/lib/python2.7/site-packages/easybuild_framework-3.3.1-py2.7.egg/easybuild/framework/easyconfig/easyconfig.py:525
in validate_os_deps)
== 2017-11-16 06:23:24,866 build_log.py:156 ERROR EasyBuild crashed with an
error (at
easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.1/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/vsc/utils/exceptions.py:124
in __init__): Failed to process easyconfig
/tmp/jobs/snow/2594/eb-En1YcP/tweaked_dep_easyconfigs/CMake-3.6.1-intel-2017a.eb:
One or more OS dependencies were not found: [('openssl-devel',
'libssl-dev', 'libopenssl-devel')] (at
easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.1/lib/python2.7/site-packages/easybuild_framework-3.3.1-py2.7.egg/easybuild/framework/easyconfig/easyconfig.py:1263
in process_easyconfig)
*Joseph John*
*Assistant Professor*
*Department of Computer Science & Engineering*
*Rajagiri School of Engineering & Technology*
*https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>*
On Thu, Nov 16, 2017 at 9:25 PM, Mr. Joseph John <
jose...@rajagiritech.edu.in> wrote:
> Hi,
> I am attaching the entire log file. Unfortunately, it is too long to
> be included in the mail body. Sorry for the trouble.
>
>
>
> *Joseph John*
>
> *Assistant Professor*
>
> *Department of Computer Science & Engineering*
> *Rajagiri School of Engineering & Technology*
> *https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>*
>
> On Wed, Nov 15, 2017 at 8:54 PM, Alan O'Cais <a.oc...@fz-juelich.de>
> wrote:
>
>> Hi Joesph,
>>
>> Can you give us the explicit error you are getting (or perhaps the whole
>> log file)? I'm just wondering where it is coming from, it's not directly
>> from EasyBuild, it's from one of the packages it is trying to install, the
>> question is which one.
>>
>> Alan
>>
>> On 13 November 2017 at 18:08, Mr. Joseph John <
>> jose...@rajagiritech.edu.in> wrote:
>>
>>> Hi,
>>> I tried that and now that error is gone. But now I get an error
>>> saying 'Linux headers" are missing. Is there anyway to install it through
>>> easybuild or do I have to install it directly in the PXE image?
>>>
>>>
>>> On Friday, November 10, 2017, Sami, Umit D. <uds...@partners.org> wrote:
>>>
>>>> You can add OS dependencies as a parameter to your *.eb file and
>>>> install all dependencies with package manager for your linux distributions
>>>> (i.e. for centos: Yum install libssl-dev).
>>>>
>>>>
>>>>
>>>> *-----------------------------------*
>>>>
>>>> *Umit D. Sami*
>>>>
>>>> HPC Apps & Systems (ERIS)
>>>>
>>>> w: http://www.partners.org
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> *From: *<easybuild-requ...@lists.ugent.be> on behalf of "Mr. Joseph
>>>> John" <jose...@rajagiritech.edu.in>
>>>> *Reply-To: *"easybuild@lists.ugent.be" <easybuild@lists.ugent.be>
>>>> *Date: *Friday, November 10, 2017 at 5:01 AM
>>>> *To: *"easybuild@lists.ugent.be" <easybuild@lists.ugent.be>
>>>> *Subject: *[easybuild] installing octave
>>>>
>>>>
>>>>
>>>> Hi,
>>>>
>>>> I am new to EasyBuild. I tried installing Octave using the
>>>> command :
>>>>
>>>> eb Octave-4.0.3-intel-2016b.eb --try-toolchain=intel,2017a -dr
>>>>
>>>> I keep getting the error
>>>>
>>>>
>>>> ERROR: Failed to process easyconfig /tmp/jobs/snow/2537/eb-Q5M8UC/
>>>> tweaked_dep_easyconfigs/cURL-7.49.1-intel-2017a.eb: One or more OS
>>>> dependencies were not found: [('openssl-devel', 'libssl-dev',
>>>> 'libopenssl-devel')]
>>>> snow@sny02:/sNow/easybuild/software/EasyBuild/3.2.1/lib/pyth
>>>> on2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/ea
>>>> sybuild/easyconfigs/o/Oc
>>>> tave$
>>>>
>>>> Then I installed openssl and libssl (that too using EasyBuild)
>>>> and I still get the error. We use single image provisioning in the compute
>>>> nodes. The software suite used in Snow! from HPCNow!.
>>>>
>>>> How do I solve this issue?
>>>>
>>>>
>>>>
>>>> *Joseph John*
>>>>
>>>> *Assistant Professor*
>>>>
>>>> *Department of Computer Science & Engineering*
>>>>
>>>> *Rajagiri School of Engineering & Technology*
>>>> *https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>*
>>>>
>>>> The information in this e-mail is intended only for the person to whom
>>>> it is
>>>> addressed. If you believe this e-mail was sent to you in error and the
>>>> e-mail
>>>> contains patient information, please contact the Partners Compliance
>>>> HelpLine at
>>>> http://www.partners.org/complianceline . If the e-mail was sent to you
>>>> in error
>>>> but does not contain patient information, please contact the sender and
>>>> properly
>>>> dispose of the e-mail.
>>>>
>>>
>>>
>>> --
>>>
>>>
>>> *Joseph John *
>>>
>>> *Assistant Professor *
>>>
>>> *Department of Computer Science & Engineering *
>>> *Rajagiri School of Engineering & Technology*
>>> *https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>*
>>>
>>>
>>
>>
>> --
>> Dr. Alan O'Cais
>> E-CAM Software Manager
>> Juelich Supercomputing Centre
>> Forschungszentrum Juelich GmbH
>> 52425 Juelich, Germany
>>
>> Phone: +49 2461 61 5213
>> Fax: +49 2461 61 6656
>> E-mail: a.oc...@fz-juelich.de
>> WWW: http://www.fz-juelich.de/ias/jsc/EN
>>
>>
>> ------------------------------------------------------------
>> ------------------------------------
>> ------------------------------------------------------------
>> ------------------------------------
>> Forschungszentrum Juelich GmbH
>> 52425 Juelich
>> Sitz der Gesellschaft: Juelich
>> Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
>> Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher
>> Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender),
>> Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt,
>> Prof. Dr. Sebastian M. Schmidt
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>>
>>
>
