Hi Alan,
The problem is not just for octave I tried installing numpy
and I am still getting the same error.
== resolving dependencies ...
ERROR: Failed to process easyconfig
/tmp/jobs/snow/2619/eb-f8WHrl/tweaked_dep_easyconfigs/Python-2.7.11-foss-2017a.eb:
One or more OS dependencies were not found: [('openssl-devel',
'libssl-dev', 'libopenssl-devel')]
*Joseph John*
*Assistant Professor*
*Department of Computer Science & Engineering*
*Rajagiri School of Engineering & Technology*
*https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>*
On Fri, Nov 17, 2017 at 3:45 PM, Mr. Joseph John <
jose...@rajagiritech.edu.in> wrote:
> Hi Alan,
> I had installed openssl-devel. The computer node gets the
> image from the PXE server. I had installed openssl-devel in the image and
> then I rebooted the compute nodes just to be sure. The problem still
> persists.
>
>
> On Friday, November 17, 2017, Alan O'Cais <a.oc...@fz-juelich.de> wrote:
>
>> Dear Joseph,
>>
>> You can see in the logs that the commands EasyBuild is attempting to run
>> to check the SSL OS dependencies are:
>> rpm -q openssl-devel
>> rpm -q libopenssl-devel
>> rpm -q libssl-dev
>> I'm pretty sure it's the first of these that is relevant for CentOS. Have
>> you installed the devel libraries in the image? It would seem that you
>> haven''t (maybe you just installed the openssl rather than openssl-devel?)
>> since this error still exists.
>>
>> Alan
>>
>>
>> On 16 November 2017 at 18:22, Mr. Joseph John <
>> jose...@rajagiritech.edu.in> wrote:
>>
>>> Hi,
>>> I installed the dependencies in the image i used. I did not make
>>> any other changed. But the error still persists.
>>>
>>>
>>> On Thursday, November 16, 2017, Alan O'Cais <a.oc...@fz-juelich.de>
>>> wrote:
>>>
>>>> The error in this log is
>>>> One or more OS dependencies were not found: [('openssl-devel',
>>>> 'libssl-dev', 'libopenssl-devel')]
>>>> which is the same as the first error, did you undo the change you made
>>>> to the image you use?
>>>>
>>>> On 16 Nov 2017 18:03, "Mr. Joseph John" <jose...@rajagiritech.edu.in>
>>>> wrote:
>>>>
>>>>> Hi,
>>>>> Unfortunately, the entire log file is 23MB. I am including the
>>>>> parts of the log, I am assuming, is relevant :
>>>>>
>>>>> == 2017-11-16 06:23:24,532 easyconfig.py:907 DEBUG Using subtoolchain
>>>>> {'version': '2017a', 'name': 'intel'} for dep ncurses 6.0
>>>>> == 2017-11-16 06:23:24,532 easyconfig.py:916 DEBUG Figured out
>>>>> toolchain to use for dep ncurses 6.0: {'version': '2017a', 'name':
>>>>> 'intel'}
>>>>> == 2017-11-16 06:23:24,532 easyconfig.py:1704 DEBUG Determining short
>>>>> module name for {'external_module_metadata': {}, 'full_mod_name': None,
>>>>> 'toolchain': {'version': '2017a', 'name': 'intel'}, 'name': 'ncurses',
>>>>> 'dummy': False, 'short_mod_name': None, 'external_module': False,
>>>>> 'versionsuffix': '', 'version': '6.0', 'toolchain_inherited': True,
>>>>> 'hidden': False, 'build_only': False} (force_visible: False)
>>>>> == 2017-11-16 06:23:24,533 easyconfig.py:1656 DEBUG No alternative
>>>>> software name specified to determine module name with
>>>>> == 2017-11-16 06:23:24,533 utilities.py:103 DEBUG Module name
>>>>> ncurses/6.0-intel-2017a validated
>>>>> == 2017-11-16 06:23:24,533 easyconfig.py:1706 DEBUG Obtained valid
>>>>> short module name ncurses/6.0-intel-2017a
>>>>> == 2017-11-16 06:23:24,533 easyconfig.py:1676 DEBUG Determining full
>>>>> module name for {'external_module_metadata': {}, 'full_mod_name': None,
>>>>> 'toolchain': {'version': '2017a', 'name': 'intel'}, 'name': 'ncurses',
>>>>> 'dummy': False, 'short_mod_name': None, 'external_module': False,
>>>>> 'versionsuffix': '', 'version': '6.0', 'toolchain_inherited': True,
>>>>> 'hidden': False, 'build_only': False} (force_visible: False)
>>>>> == 2017-11-16 06:23:24,533 easyconfig.py:1656 DEBUG No alternative
>>>>> software name specified to determine module name with
>>>>> == 2017-11-16 06:23:24,534 utilities.py:103 DEBUG Module name
>>>>> ncurses/6.0-intel-2017a validated
>>>>> == 2017-11-16 06:23:24,534 easyconfig.py:1683 DEBUG Obtained valid
>>>>> full module name ncurses/6.0-intel-2017a
>>>>> == 2017-11-16 06:23:24,534 easyconfig.py:467 INFO Validating easyconfig
>>>>> == 2017-11-16 06:23:24,534 easyconfig.py:472 INFO Checking OS
>>>>> dependencies
>>>>> == 2017-11-16 06:23:24,535 filetools.py:301 INFO Command rpm found at
>>>>> /usr/bin/rpm
>>>>> == 2017-11-16 06:23:24,535 run.py:132 DEBUG run_cmd: running cmd rpm
>>>>> -q openssl-devel (in /sNow/easybuild/software/EasyB
>>>>> uild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs
>>>>> -3.2.1-py2.7.egg/easybuild/easyconfigs/o/OpenSSL)
>>>>> == 2017-11-16 06:23:24,535 run.py:157 INFO running cmd: rpm -q
>>>>> openssl-devel
>>>>> == 2017-11-16 06:23:24,608 run.py:439 DEBUG cmd "rpm -q openssl-devel"
>>>>> exited with exitcode 1 and output:
>>>>> package openssl-devel is not installed
>>>>>
>>>>> == 2017-11-16 06:23:24,608 run.py:483 DEBUG Using default regular
>>>>> expression: (?<![(,-]|\w)(?:error|segmentation
>>>>> fault|failed)(?![(,-]|\.?\w)
>>>>> == 2017-11-16 06:23:24,610 filetools.py:309 WARNING Could not find
>>>>> command 'dpkg' (with permissions to read/execute it) in $PATH
>>>>> (['/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.1/bin',
>>>>> '/sNow/snow-tools/bin', '/sNow/snow-tools/sbin', '/usr/lib64/qt-3.3/bin',
>>>>> '/usr/local/cuda-8.0/bin', '/sNow/snow-tools/bin',
>>>>> '/sNow/snow-tools/sbin',
>>>>> '/usr/local/bin', '/usr/bin', '/bin', '/usr/local/games', '/usr/games',
>>>>> '/opt/ibutils/bin'])
>>>>> == 2017-11-16 06:23:24,610 filetools.py:301 INFO Command rpm found at
>>>>> /usr/bin/rpm
>>>>> == 2017-11-16 06:23:24,610 run.py:132 DEBUG run_cmd: running cmd rpm
>>>>> -q libssl-dev (in /sNow/easybuild/software/EasyB
>>>>> uild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs
>>>>> -3.2.1-py2.7.egg/easybuild/easyconfigs/o/OpenSSL)
>>>>> == 2017-11-16 06:23:24,610 run.py:157 INFO running cmd: rpm -q
>>>>> libssl-dev
>>>>> == 2017-11-16 06:23:24,683 run.py:439 DEBUG cmd "rpm -q libssl-dev"
>>>>> exited with exitcode 1 and output:
>>>>> package libssl-dev is not installed
>>>>>
>>>>> == 2017-11-16 06:23:24,683 run.py:483 DEBUG Using default regular
>>>>> expression: (?<![(,-]|\w)(?:error|segmentation
>>>>> fault|failed)(?![(,-]|\.?\w)
>>>>> == 2017-11-16 06:23:24,684 filetools.py:309 WARNING Could not find
>>>>> command 'dpkg' (with permissions to read/execute it) in $PATH
>>>>> (['/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.1/bin',
>>>>> '/sNow/snow-tools/bin', '/sNow/snow-tools/sbin', '/usr/lib64/qt-3.3/bin',
>>>>> '/usr/local/cuda-8.0/bin', '/sNow/snow-tools/bin',
>>>>> '/sNow/snow-tools/sbin',
>>>>> '/usr/local/bin', '/usr/bin', '/bin', '/usr/local/games', '/usr/games',
>>>>> '/opt/ibutils/bin'])
>>>>> == 2017-11-16 06:23:24,684 filetools.py:301 INFO Command rpm found at
>>>>> /usr/bin/rpm
>>>>> == 2017-11-16 06:23:24,685 run.py:132 DEBUG run_cmd: running cmd rpm
>>>>> -q libopenssl-devel (in /sNow/easybuild/software/EasyB
>>>>> uild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs
>>>>> -3.2.1-py2.7.egg/easybuild/easyconfigs/o/OpenSSL)
>>>>> == 2017-11-16 06:23:24,685 run.py:157 INFO running cmd: rpm -q
>>>>> libopenssl-devel
>>>>> == 2017-11-16 06:23:24,746 run.py:439 DEBUG cmd "rpm -q
>>>>> libopenssl-devel" exited with exitcode 1 and output:
>>>>> package libopenssl-devel is not installed
>>>>>
>>>>> == 2017-11-16 06:23:24,747 run.py:483 DEBUG Using default regular
>>>>> expression: (?<![(,-]|\w)(?:error|segmentation
>>>>> fault|failed)(?![(,-]|\.?\w)
>>>>> == 2017-11-16 06:23:24,747 filetools.py:309 WARNING Could not find
>>>>> command 'dpkg' (with permissions to read/execute it) in $PATH
>>>>> (['/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.1/bin',
>>>>> '/sNow/snow-tools/bin', '/sNow/snow-tools/sbin', '/usr/lib64/qt-3.3/bin',
>>>>> '/usr/local/cuda-8.0/bin', '/sNow/snow-tools/bin',
>>>>> '/sNow/snow-tools/sbin',
>>>>> '/usr/local/bin', '/usr/bin', '/bin', '/usr/local/games', '/usr/games',
>>>>> '/opt/ibutils/bin'])
>>>>> == 2017-11-16 06:23:24,865 build_log.py:156 ERROR EasyBuild crashed
>>>>> with an error (at easybuild/centos/7.3.1611/Broa
>>>>> dwell/software/EasyBuild/3.3.1/lib/python2.7/site-packages/v
>>>>> sc_base-2.5.8-py2.7.egg/vsc/utils/exceptions.py:124 in __init__): One
>>>>> or more OS dependencies were not found: [('openssl-devel', 'libssl-dev',
>>>>> 'libopenssl-devel')] (at easybuild/centos/7.3.1611/Broa
>>>>> dwell/software/EasyBuild/3.3.1/lib/python2.7/site-packages/e
>>>>> asybuild_framework-3.3.1-py2.7.egg/easybuild/framework/easyconfig/easyconfig.py:525
>>>>> in validate_os_deps)
>>>>> == 2017-11-16 06:23:24,866 build_log.py:156 ERROR EasyBuild crashed
>>>>> with an error (at easybuild/centos/7.3.1611/Broa
>>>>> dwell/software/EasyBuild/3.3.1/lib/python2.7/site-packages/v
>>>>> sc_base-2.5.8-py2.7.egg/vsc/utils/exceptions.py:124 in __init__):
>>>>> Failed to process easyconfig /tmp/jobs/snow/2594/eb-En1YcP/
>>>>> tweaked_dep_easyconfigs/CMake-3.6.1-intel-2017a.eb: One or more OS
>>>>> dependencies were not found: [('openssl-devel', 'libssl-dev',
>>>>> 'libopenssl-devel')] (at easybuild/centos/7.3.1611/Broa
>>>>> dwell/software/EasyBuild/3.3.1/lib/python2.7/site-packages/e
>>>>> asybuild_framework-3.3.1-py2.7.egg/easybuild/framework/easyconfig/easyconfig.py:1263
>>>>> in process_easyconfig)
>>>>>
>>>>>
>>>>>
>>>>> *Joseph John*
>>>>>
>>>>> *Assistant Professor*
>>>>>
>>>>> *Department of Computer Science & Engineering*
>>>>> *Rajagiri School of Engineering & Technology*
>>>>> *https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>*
>>>>>
>>>>> On Thu, Nov 16, 2017 at 9:25 PM, Mr. Joseph John <
>>>>> jose...@rajagiritech.edu.in> wrote:
>>>>>
>>>>>> Hi,
>>>>>> I am attaching the entire log file. Unfortunately, it is too
>>>>>> long to be included in the mail body. Sorry for the trouble.
>>>>>>
>>>>>>
>>>>>>
>>>>>> *Joseph John*
>>>>>>
>>>>>> *Assistant Professor*
>>>>>>
>>>>>> *Department of Computer Science & Engineering*
>>>>>> *Rajagiri School of Engineering & Technology*
>>>>>> *https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>*
>>>>>>
>>>>>> On Wed, Nov 15, 2017 at 8:54 PM, Alan O'Cais <a.oc...@fz-juelich.de>
>>>>>> wrote:
>>>>>>
>>>>>>> Hi Joesph,
>>>>>>>
>>>>>>> Can you give us the explicit error you are getting (or perhaps the
>>>>>>> whole log file)? I'm just wondering where it is coming from, it's not
>>>>>>> directly from EasyBuild, it's from one of the packages it is trying to
>>>>>>> install, the question is which one.
>>>>>>>
>>>>>>> Alan
>>>>>>>
>>>>>>> On 13 November 2017 at 18:08, Mr. Joseph John <
>>>>>>> jose...@rajagiritech.edu.in> wrote:
>>>>>>>
>>>>>>>> Hi,
>>>>>>>> I tried that and now that error is gone. But now I get an
>>>>>>>> error saying 'Linux headers" are missing. Is there anyway to install it
>>>>>>>> through easybuild or do I have to install it directly in the PXE image?
>>>>>>>>
>>>>>>>>
>>>>>>>> On Friday, November 10, 2017, Sami, Umit D. <uds...@partners.org>
>>>>>>>> wrote:
>>>>>>>>
>>>>>>>>> You can add OS dependencies as a parameter to your *.eb file and
>>>>>>>>> install all dependencies with package manager for your linux
>>>>>>>>> distributions
>>>>>>>>> (i.e. for centos: Yum install libssl-dev).
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> *-----------------------------------*
>>>>>>>>>
>>>>>>>>> *Umit D. Sami*
>>>>>>>>>
>>>>>>>>> HPC Apps & Systems (ERIS)
>>>>>>>>>
>>>>>>>>> w: http://www.partners.org
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> *From: *<easybuild-requ...@lists.ugent.be> on behalf of "Mr.
>>>>>>>>> Joseph John" <jose...@rajagiritech.edu.in>
>>>>>>>>> *Reply-To: *"easybuild@lists.ugent.be" <easybuild@lists.ugent.be>
>>>>>>>>> *Date: *Friday, November 10, 2017 at 5:01 AM
>>>>>>>>> *To: *"easybuild@lists.ugent.be" <easybuild@lists.ugent.be>
>>>>>>>>> *Subject: *[easybuild] installing octave
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Hi,
>>>>>>>>>
>>>>>>>>> I am new to EasyBuild. I tried installing Octave using the
>>>>>>>>> command :
>>>>>>>>>
>>>>>>>>> eb Octave-4.0.3-intel-2016b.eb --try-toolchain=intel,2017a
>>>>>>>>> -dr
>>>>>>>>>
>>>>>>>>> I keep getting the error
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> ERROR: Failed to process easyconfig /tmp/jobs/snow/2537/eb-Q5M8UC/
>>>>>>>>> tweaked_dep_easyconfigs/cURL-7.49.1-intel-2017a.eb: One or more
>>>>>>>>> OS dependencies were not found: [('openssl-devel', 'libssl-dev',
>>>>>>>>> 'libopenssl-devel')]
>>>>>>>>> snow@sny02:/sNow/easybuild/software/EasyBuild/3.2.1/lib/pyth
>>>>>>>>> on2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/ea
>>>>>>>>> sybuild/easyconfigs/o/Oc
>>>>>>>>> tave$
>>>>>>>>>
>>>>>>>>> Then I installed openssl and libssl (that too using
>>>>>>>>> EasyBuild) and I still get the error. We use single image
>>>>>>>>> provisioning in
>>>>>>>>> the compute nodes. The software suite used in Snow! from HPCNow!.
>>>>>>>>>
>>>>>>>>> How do I solve this issue?
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> *Joseph John*
>>>>>>>>>
>>>>>>>>> *Assistant Professor*
>>>>>>>>>
>>>>>>>>> *Department of Computer Science & Engineering*
>>>>>>>>>
>>>>>>>>> *Rajagiri School of Engineering & Technology*
>>>>>>>>> *https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>*
>>>>>>>>>
>>>>>>>>> The information in this e-mail is intended only for the person to
>>>>>>>>> whom it is
>>>>>>>>> addressed. If you believe this e-mail was sent to you in error and
>>>>>>>>> the e-mail
>>>>>>>>> contains patient information, please contact the Partners
>>>>>>>>> Compliance HelpLine at
>>>>>>>>> http://www.partners.org/complianceline . If the e-mail was sent
>>>>>>>>> to you in error
>>>>>>>>> but does not contain patient information, please contact the
>>>>>>>>> sender and properly
>>>>>>>>> dispose of the e-mail.
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>>
>>>>>>>>
>>>>>>>> *Joseph John *
>>>>>>>>
>>>>>>>> *Assistant Professor *
>>>>>>>>
>>>>>>>> *Department of Computer Science & Engineering *
>>>>>>>> *Rajagiri School of Engineering & Technology*
>>>>>>>> *https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>*
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Dr. Alan O'Cais
>>>>>>> E-CAM Software Manager
>>>>>>> Juelich Supercomputing Centre
>>>>>>> Forschungszentrum Juelich GmbH
>>>>>>> 52425 Juelich, Germany
>>>>>>>
>>>>>>> Phone: +49 2461 61 5213 <02461%20615213>
>>>>>>> Fax: +49 2461 61 6656 <02461%20616656>
>>>>>>> E-mail: a.oc...@fz-juelich.de
>>>>>>> WWW: http://www.fz-juelich.de/ias/jsc/EN
>>>>>>>
>>>>>>>
>>>>>>> ------------------------------------------------------------
>>>>>>> ------------------------------------
>>>>>>> ------------------------------------------------------------
>>>>>>> ------------------------------------
>>>>>>> Forschungszentrum Juelich GmbH
>>>>>>> 52425 Juelich
>>>>>>> Sitz der Gesellschaft: Juelich
>>>>>>> Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
>>>>>>> Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher
>>>>>>> Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender),
>>>>>>> Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt,
>>>>>>> Prof. Dr. Sebastian M. Schmidt
>>>>>>> ------------------------------------------------------------
>>>>>>> ------------------------------------
>>>>>>> ------------------------------------------------------------
>>>>>>> ------------------------------------
>>>>>>>
>>>>>>>
>>>>>>
>>>>>
>>>
>>> --
>>>
>>>
>>> *Joseph John*
>>>
>>> *Assistant Professor*
>>>
>>> *Department of Computer Science & Engineering*
>>> *Rajagiri School of Engineering & Technology*
>>> *https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>*
>>>
>>>
>>
>>
>> --
>> Dr. Alan O'Cais
>> E-CAM Software Manager
>> Juelich Supercomputing Centre
>> Forschungszentrum Juelich GmbH
>> 52425 Juelich, Germany
>>
>> Phone: +49 2461 61 5213
>> Fax: +49 2461 61 6656
>> E-mail: a.oc...@fz-juelich.de
>> WWW: http://www.fz-juelich.de/ias/jsc/EN
>>
>
>
> --
>
>
> *Joseph John*
>
> *Assistant Professor*
>
> *Department of Computer Science & Engineering*
> *Rajagiri School of Engineering & Technology*
> *https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>*
>
>
