On Thu, Apr 22, 2010 at 6:01 PM, Peter Rice <p...@ebi.ac.uk> wrote: >> Does this mean there is an updated seqret in a public repository where I >> can convert an ABI file to FASTQ taking the ABI basecaller's sequence >> and PHRED scores? I'd be interested to test that... or a patch against >> EMBOSS 6.2.0. > > It is in the latest CVS code and will appeart in the July release.
Thanks Peter, I tried to grab this from the anonymous CVS mirror as per the EMBOSS documentation here: http://emboss.sourceforge.net/developers/cvs.html Unfortunately it failed: $ cvs -d :pserver:c...@cvs.open-bio.org:/home/repository/emboss login Logging in to :pserver:c...@cvs.open-bio.org:2401/home/repository/emboss CVS password: cvs login: authorization failed: server cvs.open-bio.org rejected access to /home/repository/emboss for user cvs I know there have been VM problems on this machine (also known as code.open-bio.org) which have been intermitently been affecting the anonymous SVN access for other projects like BioPerl. One short term solution would be to give my OBF username peterc access to the master Emboss CVS repository on dev.open-bio.org (joke), or look into an external mirror - for example BioPerl are using github (and seriously talking about moving from SVN to git). This is going even more off topic but since ViewCVS broke a while back, I've found it much harder to browse the Emboss source code :( Regards, Peter C. _______________________________________________ EMBOSS mailing list EMBOSS@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/emboss