On 30/03/2010 14:13, Peter Rice wrote:
Where do I look to find scores that we can use (and how do we convert those to phred quality scores)?
Aha, found something. The field is called PCON (confidence values), with values 0-255.
There is a possibility that these could be phred scores, but I suspect they are whatever the basecaller has decided to write there.
http://www.appliedbiosystems.com/support/software_community/ABIF_File_Format.pdf Peter R. _______________________________________________ EMBOSS mailing list EMBOSS@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/emboss
