Building mpi4py fails on Ubuntu 12.04 because of some problem with
system Cython (see below for full log)
ImportError: /usr/lib/pymodules/python2.7/Cython/Compiler/Code.so:
undefined symbol: PyUnicodeUCS4_DecodeUTF8
Shouldn't be Cython built also?
Jan
2014/12/09 18:02:56 - INFO: [package:run_job] running install
2014/12/09 18:02:56 - INFO: [package:run_job] running build
2014/12/09 18:02:56 - INFO: [package:run_job] running build_src
2014/12/09 18:02:56 - INFO: [package:run_job] cythonizing
'mpi4py.MPI.pyx' -> 'mpi4py.MPI.c' 2014/12/09 18:02:56 - INFO:
[package:run_job] Traceback (most recent call last): 2014/12/09
18:02:56 - INFO: [package:run_job] File "setup.py", line 624, in
<module> 2014/12/09 18:02:56 - INFO: [package:run_job] main()
2014/12/09 18:02:56 - INFO: [package:run_job] File "setup.py", line
621, in main 2014/12/09 18:02:56 - INFO: [package:run_job]
run_setup() 2014/12/09 18:02:56 - INFO: [package:run_job] File
"setup.py", line 493, in run_setup 2014/12/09 18:02:56 - INFO:
[package:run_job] **metadata) 2014/12/09 18:02:56 - INFO:
[package:run_job] File
"/srv/groot/blechta/.hashdist/tmp/mpi4py-dps5vsljzl7g-1/conf/mpidistutils.py",
line 441, in setup 2014/12/09 18:02:56 - INFO: [package:run_job]
return fcn_setup(**attrs) 2014/12/09 18:02:56 - INFO:
[package:run_job] File
"/srv/groot/blechta/.hashdist/bld/python/ctzx2dm36c6d/lib/python2.7/distutils/core.py",
line 151, in setup 2014/12/09 18:02:56 - INFO: [package:run_job]
dist.run_commands() 2014/12/09 18:02:56 - INFO: [package:run_job]
File
"/srv/groot/blechta/.hashdist/bld/python/ctzx2dm36c6d/lib/python2.7/distutils/dist.py",
line 953, in run_commands 2014/12/09 18:02:56 - INFO:
[package:run_job] self.run_command(cmd) 2014/12/09 18:02:56 - INFO:
[package:run_job] File
"/srv/groot/blechta/.hashdist/bld/python/ctzx2dm36c6d/lib/python2.7/distutils/dist.py",
line 972, in run_command 2014/12/09 18:02:56 - INFO:
[package:run_job] cmd_obj.run() 2014/12/09 18:02:56 - INFO:
[package:run_job] File
"/srv/groot/blechta/.hashdist/bld/python/ctzx2dm36c6d/lib/python2.7/distutils/command/install.py",
line 563, in run 2014/12/09 18:02:56 - INFO: [package:run_job]
self.run_command('build') 2014/12/09 18:02:56 - INFO:
[package:run_job] File
"/srv/groot/blechta/.hashdist/bld/python/ctzx2dm36c6d/lib/python2.7/distutils/cmd.py",
line 326, in run_command 2014/12/09 18:02:56 - INFO:
[package:run_job] self.distribution.run_command(command) 2014/12/09
18:02:56 - INFO: [package:run_job] File
"/srv/groot/blechta/.hashdist/bld/python/ctzx2dm36c6d/lib/python2.7/distutils/dist.py",
line 972, in run_command 2014/12/09 18:02:56 - INFO:
[package:run_job] cmd_obj.run() 2014/12/09 18:02:56 - INFO:
[package:run_job] File
"/srv/groot/blechta/.hashdist/bld/python/ctzx2dm36c6d/lib/python2.7/distutils/command/build.py",
line 127, in run 2014/12/09 18:02:56 - INFO: [package:run_job]
self.run_command(cmd_name) 2014/12/09 18:02:56 - INFO:
[package:run_job] File
"/srv/groot/blechta/.hashdist/bld/python/ctzx2dm36c6d/lib/python2.7/distutils/cmd.py",
line 326, in run_command 2014/12/09 18:02:56 - INFO:
[package:run_job] self.distribution.run_command(command) 2014/12/09
18:02:56 - INFO: [package:run_job] File
"/srv/groot/blechta/.hashdist/bld/python/ctzx2dm36c6d/lib/python2.7/distutils/dist.py",
line 972, in run_command 2014/12/09 18:02:56 - INFO:
[package:run_job] cmd_obj.run() 2014/12/09 18:02:56 - INFO:
[package:run_job] File "setup.py", line 594, in build_sources
2014/12/09 18:02:56 - INFO: [package:run_job] wdir='src',
force=cmd.force, VERSION=CYTHON) 2014/12/09 18:02:56 - INFO:
[package:run_job] File "setup.py", line 573, in run_cython 2014/12/09
18:02:56 - INFO: [package:run_job] wdir=wdir) 2014/12/09 18:02:56 -
INFO: [package:run_job] File
"/srv/groot/blechta/.hashdist/tmp/mpi4py-dps5vsljzl7g-1/conf/cythonize.py",
line 9, in cythonize 2014/12/09 18:02:56 - INFO: [package:run_job]
from Cython.Compiler.Main import \ 2014/12/09 18:02:56 - INFO:
[package:run_job] File
"/usr/lib/pymodules/python2.7/Cython/Compiler/Main.py", line 18, in
<module> 2014/12/09 18:02:56 - INFO: [package:run_job] import Code
2014/12/09 18:02:56 - INFO: [package:run_job]
ImportError: /usr/lib/pymodules/python2.7/Cython/Compiler/Code.so:
undefined symbol: PyUnicodeUCS4_DecodeUTF8 2014/12/09 18:02:56 - ERROR:
[package:run_job] Command '[u'/bin/bash', '_hashdist/build.sh']'
returned non-zero exit status 1 2014/12/09 18:02:56 - ERROR:
[package:run_job] command failed (code=1); raising
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