This is fantastic! The installation of the dev version with hasdist works fine on my Ubuntu 14.10 laptop.
My only comment is that the script tells me at the end: """ For your convenience, a configuration file named fenics.dev has been created in the current directory. For setting up your environment, you should issue the following command: source fenics.master """ The last line should be "source fenics.dev" 2014-12-09 22:46 GMT+01:00 Lizao Li <[email protected]>: > @Johannes, the SLEPc patched worked. Thanks~ On Archlinux, these two lines > builds FEniCS successfully: > > TMP=/tmp/test; mkdir $TMP; cd $TMP; ln -s `which python2` python > wget -O - http://fenicsproject.org/fenics-install.sh | bash > > Since python is included in the package, it is probably a good idea to > include ipython as well. The default repl is a pain to use. > > @Jan, I tried GCC4.8.2 on the same CentOS and it still fails with the same > error. Upon digging further into the build log, it seems dolfin did > something funny: > > 2014/12/09 14:50:53 - INFO: [package:run_job] -- The C compiler > identification is GNU 4.4.7 > 2014/12/09 14:50:53 - INFO: [package:run_job] -- The CXX compiler > identification is GNU 4.4.7 > 2014/12/09 14:50:53 - INFO: [package:run_job] -- Check for working C > compiler: */usr/bin/cc* > 2014/12/09 14:50:54 - INFO: [package:run_job] -- Check for working C > compiler: */usr/bin/cc* -- works > 2014/12/09 14:50:54 - INFO: [package:run_job] -- Detecting C compiler ABI > info > 2014/12/09 14:50:54 - INFO: [package:run_job] -- Detecting C compiler ABI > info - done > 2014/12/09 14:50:54 - INFO: [package:run_job] -- Check for working CXX > compiler: /usr/bin/c++ > 2014/12/09 14:50:54 - INFO: [package:run_job] -- Check for working CXX > compiler: /usr/bin/c++ -- works > > Note that in the above cc and c++ (wrong version), not gcc and g++ > (correct version), were used. I think symlink gcc probably won't work here > because libc and includes are also going to be wrong, unlike the python > case where the symlinked python is only used to run the hashdist script. > Shouldn't dolfin cmake choose the compiler following some priority like > mpic++>g++>c++ ? > > On Tue, Dec 9, 2014 at 11:16 AM, Jan Blechta <[email protected]> > wrote: > >> Building mpi4py fails on Ubuntu 12.04 because of some problem with >> system Cython (see below for full log) >> >> ImportError: /usr/lib/pymodules/python2.7/Cython/Compiler/Code.so: >> undefined symbol: PyUnicodeUCS4_DecodeUTF8 >> >> Shouldn't be Cython built also? >> >> Jan >> >> >> 2014/12/09 18:02:56 - INFO: [package:run_job] running install >> 2014/12/09 18:02:56 - INFO: [package:run_job] running build >> 2014/12/09 18:02:56 - INFO: [package:run_job] running build_src >> 2014/12/09 18:02:56 - INFO: [package:run_job] cythonizing >> 'mpi4py.MPI.pyx' -> 'mpi4py.MPI.c' 2014/12/09 18:02:56 - INFO: >> [package:run_job] Traceback (most recent call last): 2014/12/09 >> 18:02:56 - INFO: [package:run_job] File "setup.py", line 624, in >> <module> 2014/12/09 18:02:56 - INFO: [package:run_job] main() >> 2014/12/09 18:02:56 - INFO: [package:run_job] File "setup.py", line >> 621, in main 2014/12/09 18:02:56 - INFO: [package:run_job] >> run_setup() 2014/12/09 18:02:56 - INFO: [package:run_job] File >> "setup.py", line 493, in run_setup 2014/12/09 18:02:56 - INFO: >> [package:run_job] **metadata) 2014/12/09 18:02:56 - INFO: >> [package:run_job] File >> >> "/srv/groot/blechta/.hashdist/tmp/mpi4py-dps5vsljzl7g-1/conf/mpidistutils.py", >> line 441, in setup 2014/12/09 18:02:56 - INFO: [package:run_job] >> return fcn_setup(**attrs) 2014/12/09 18:02:56 - INFO: >> [package:run_job] File >> >> "/srv/groot/blechta/.hashdist/bld/python/ctzx2dm36c6d/lib/python2.7/distutils/core.py", >> line 151, in setup 2014/12/09 18:02:56 - INFO: [package:run_job] >> dist.run_commands() 2014/12/09 18:02:56 - INFO: [package:run_job] >> File >> >> "/srv/groot/blechta/.hashdist/bld/python/ctzx2dm36c6d/lib/python2.7/distutils/dist.py", >> line 953, in run_commands 2014/12/09 18:02:56 - INFO: >> [package:run_job] self.run_command(cmd) 2014/12/09 18:02:56 - INFO: >> [package:run_job] File >> >> "/srv/groot/blechta/.hashdist/bld/python/ctzx2dm36c6d/lib/python2.7/distutils/dist.py", >> line 972, in run_command 2014/12/09 18:02:56 - INFO: >> [package:run_job] cmd_obj.run() 2014/12/09 18:02:56 - INFO: >> [package:run_job] File >> >> "/srv/groot/blechta/.hashdist/bld/python/ctzx2dm36c6d/lib/python2.7/distutils/command/install.py", >> line 563, in run 2014/12/09 18:02:56 - INFO: [package:run_job] >> self.run_command('build') 2014/12/09 18:02:56 - INFO: >> [package:run_job] File >> >> "/srv/groot/blechta/.hashdist/bld/python/ctzx2dm36c6d/lib/python2.7/distutils/cmd.py", >> line 326, in run_command 2014/12/09 18:02:56 - INFO: >> [package:run_job] self.distribution.run_command(command) 2014/12/09 >> 18:02:56 - INFO: [package:run_job] File >> >> "/srv/groot/blechta/.hashdist/bld/python/ctzx2dm36c6d/lib/python2.7/distutils/dist.py", >> line 972, in run_command 2014/12/09 18:02:56 - INFO: >> [package:run_job] cmd_obj.run() 2014/12/09 18:02:56 - INFO: >> [package:run_job] File >> >> "/srv/groot/blechta/.hashdist/bld/python/ctzx2dm36c6d/lib/python2.7/distutils/command/build.py", >> line 127, in run 2014/12/09 18:02:56 - INFO: [package:run_job] >> self.run_command(cmd_name) 2014/12/09 18:02:56 - INFO: >> [package:run_job] File >> >> "/srv/groot/blechta/.hashdist/bld/python/ctzx2dm36c6d/lib/python2.7/distutils/cmd.py", >> line 326, in run_command 2014/12/09 18:02:56 - INFO: >> [package:run_job] self.distribution.run_command(command) 2014/12/09 >> 18:02:56 - INFO: [package:run_job] File >> >> "/srv/groot/blechta/.hashdist/bld/python/ctzx2dm36c6d/lib/python2.7/distutils/dist.py", >> line 972, in run_command 2014/12/09 18:02:56 - INFO: >> [package:run_job] cmd_obj.run() 2014/12/09 18:02:56 - INFO: >> [package:run_job] File "setup.py", line 594, in build_sources >> 2014/12/09 18:02:56 - INFO: [package:run_job] wdir='src', >> force=cmd.force, VERSION=CYTHON) 2014/12/09 18:02:56 - INFO: >> [package:run_job] File "setup.py", line 573, in run_cython 2014/12/09 >> 18:02:56 - INFO: [package:run_job] wdir=wdir) 2014/12/09 18:02:56 - >> INFO: [package:run_job] File >> >> "/srv/groot/blechta/.hashdist/tmp/mpi4py-dps5vsljzl7g-1/conf/cythonize.py", >> line 9, in cythonize 2014/12/09 18:02:56 - INFO: [package:run_job] >> from Cython.Compiler.Main import \ 2014/12/09 18:02:56 - INFO: >> [package:run_job] File >> "/usr/lib/pymodules/python2.7/Cython/Compiler/Main.py", line 18, in >> <module> 2014/12/09 18:02:56 - INFO: [package:run_job] import Code >> 2014/12/09 18:02:56 - INFO: [package:run_job] >> ImportError: /usr/lib/pymodules/python2.7/Cython/Compiler/Code.so: >> undefined symbol: PyUnicodeUCS4_DecodeUTF8 2014/12/09 18:02:56 - ERROR: >> [package:run_job] Command '[u'/bin/bash', '_hashdist/build.sh']' >> returned non-zero exit status 1 2014/12/09 18:02:56 - ERROR: >> [package:run_job] command failed (code=1); raising >> _______________________________________________ >> fenics mailing list >> [email protected] >> http://fenicsproject.org/mailman/listinfo/fenics >> > > > > -- > Lizao (Larry) Li > Univeristy of Minnesota > > _______________________________________________ > fenics mailing list > [email protected] > http://fenicsproject.org/mailman/listinfo/fenics > > -- Simon Funke Imperial College London Applied Modelling and Computation Group Office: 3.56R Royal School of Mines Building Tel: +44 (0)20 759 41363 Email: [email protected]
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