Unfortunately, I still get the same error--see below. If I can provide  
more info, let me know.

Michelle Gill

gcc  -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include/ 
python2.5 -I/sw/include/python2.5  -I/sw/include  -c ././ 
ExtensionClass.c -o ./ExtensionClass.o
././ExtensionClass.c: In function 'initializeBaseExtensionClass':
././ExtensionClass.c:1542: warning: passing argument 2 of  
'PyMapping_HasKeyString' discards qualifiers from pointer target type
././ExtensionClass.c:1553: warning: passing argument 3 of 'newCMethod'  
discards qualifiers from pointer target type
././ExtensionClass.c:1553: warning: passing argument 6 of 'newCMethod'  
discards qualifiers from pointer target type
././ExtensionClass.c:1561: warning: passing argument 3 of 'newCMethod'  
discards qualifiers from pointer target type
././ExtensionClass.c:1561: warning: passing argument 6 of 'newCMethod'  
discards qualifiers from pointer target type
././ExtensionClass.c:1570: warning: passing argument 2 of  
'PyMapping_SetItemString' discards qualifiers from pointer target type
././ExtensionClass.c:1580: warning: passing argument 2 of  
'PyMapping_GetItemString' discards qualifiers from pointer target type
././ExtensionClass.c:1583: warning: assignment discards qualifiers  
from pointer target type
././ExtensionClass.c: At top level:
././ExtensionClass.c:2870: warning: initialization from incompatible  
pointer type
././ExtensionClass.c:2872: warning: 'intargfunc' is deprecated
././ExtensionClass.c:2872: warning: initialization from incompatible  
pointer type
././ExtensionClass.c:2873: warning: 'intargfunc' is deprecated
././ExtensionClass.c:2873: warning: initialization from incompatible  
pointer type
././ExtensionClass.c:2874: warning: 'intintargfunc' is deprecated
././ExtensionClass.c:2874: warning: initialization from incompatible  
pointer type
././ExtensionClass.c:2875: warning: initialization from incompatible  
pointer type
././ExtensionClass.c:2876: warning: initialization from incompatible  
pointer type
././ExtensionClass.c:2988: warning: initialization from incompatible  
pointer type
././ExtensionClass.c: In function 'CopyMethods':
././ExtensionClass.c:3267: warning: passing argument 2 of  
'PyDict_Next' from incompatible pointer type
./ExtensionClass.o   -o ./ExtensionClass.so
make[2]: execvp: ./ExtensionClass.o: Permission denied
make[2]: *** [ExtensionClass.so] Error 127
make[1]: *** [make-modules] Error 2
make: *** [unix] Error 2
### execution of make failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-pymol-py25-1.0r2-1001
(Reading database ... 15577 files and directories currently installed.)
Removing fink-buildlock-pymol-py25-1.0r2-1001 ...
Failed: phase compiling: pymol-py25-1.0r2-1001 failed

On May 9, 2008, at 3:57 PM, Jack Howarth wrote:

> Michelle and Michael,
>   Try the new pymol-py-1.0r2-1002 packaging in fink 10.4/10.5
> unstable. I've hacked around the problem of the python from
> the python2.5 package incorrectly generating the Makefile in
> contrib/modules. The package should build fine now although
> we still need to figure exactly what change was made recently
> in python25 which caused this problem. I am certain that
> pymol-py25 was building fine just a few weeks back (immediately
> after python25 was updated to 2.5.2).
>              Jack


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