Michelle,
You are still building pymol-py25-1.0r2-1001 and not
the newer pymol-py25-1.0r2-1002. Make sure you have
fink unstable enabled in /sw/etc/fink.conf and do
a 'fink selfupdate-cvs' to pull down the latest
info and patch for pymol-py before you try to rebuild
pymol-py25 again.
Jack
On Fri, May 09, 2008 at 05:35:57PM -0500, Gill Michelle wrote:
> Unfortunately, I still get the same error--see below. If I can provide more
> info, let me know.
>
> Michelle Gill
>
> gcc -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
> -I/sw/include/python2.5 -I/sw/include/python2.5 -I/sw/include -c
> ././ExtensionClass.c -o ./ExtensionClass.o
> ././ExtensionClass.c: In function 'initializeBaseExtensionClass':
> ././ExtensionClass.c:1542: warning: passing argument 2 of
> 'PyMapping_HasKeyString' discards qualifiers from pointer target type
> ././ExtensionClass.c:1553: warning: passing argument 3 of 'newCMethod'
> discards qualifiers from pointer target type
> ././ExtensionClass.c:1553: warning: passing argument 6 of 'newCMethod'
> discards qualifiers from pointer target type
> ././ExtensionClass.c:1561: warning: passing argument 3 of 'newCMethod'
> discards qualifiers from pointer target type
> ././ExtensionClass.c:1561: warning: passing argument 6 of 'newCMethod'
> discards qualifiers from pointer target type
> ././ExtensionClass.c:1570: warning: passing argument 2 of
> 'PyMapping_SetItemString' discards qualifiers from pointer target type
> ././ExtensionClass.c:1580: warning: passing argument 2 of
> 'PyMapping_GetItemString' discards qualifiers from pointer target type
> ././ExtensionClass.c:1583: warning: assignment discards qualifiers from
> pointer target type
> ././ExtensionClass.c: At top level:
> ././ExtensionClass.c:2870: warning: initialization from incompatible
> pointer type
> ././ExtensionClass.c:2872: warning: 'intargfunc' is deprecated
> ././ExtensionClass.c:2872: warning: initialization from incompatible
> pointer type
> ././ExtensionClass.c:2873: warning: 'intargfunc' is deprecated
> ././ExtensionClass.c:2873: warning: initialization from incompatible
> pointer type
> ././ExtensionClass.c:2874: warning: 'intintargfunc' is deprecated
> ././ExtensionClass.c:2874: warning: initialization from incompatible
> pointer type
> ././ExtensionClass.c:2875: warning: initialization from incompatible
> pointer type
> ././ExtensionClass.c:2876: warning: initialization from incompatible
> pointer type
> ././ExtensionClass.c:2988: warning: initialization from incompatible
> pointer type
> ././ExtensionClass.c: In function 'CopyMethods':
> ././ExtensionClass.c:3267: warning: passing argument 2 of 'PyDict_Next'
> from incompatible pointer type
> ./ExtensionClass.o -o ./ExtensionClass.so
> make[2]: execvp: ./ExtensionClass.o: Permission denied
> make[2]: *** [ExtensionClass.so] Error 127
> make[1]: *** [make-modules] Error 2
> make: *** [unix] Error 2
> ### execution of make failed, exit code 2
> Removing runtime build-lock...
> Removing build-lock package...
> /sw/bin/dpkg-lockwait -r fink-buildlock-pymol-py25-1.0r2-1001
> (Reading database ... 15577 files and directories currently installed.)
> Removing fink-buildlock-pymol-py25-1.0r2-1001 ...
> Failed: phase compiling: pymol-py25-1.0r2-1001 failed
>
> On May 9, 2008, at 3:57 PM, Jack Howarth wrote:
>
>> Michelle and Michael,
>> Try the new pymol-py-1.0r2-1002 packaging in fink 10.4/10.5
>> unstable. I've hacked around the problem of the python from
>> the python2.5 package incorrectly generating the Makefile in
>> contrib/modules. The package should build fine now although
>> we still need to figure exactly what change was made recently
>> in python25 which caused this problem. I am certain that
>> pymol-py25 was building fine just a few weeks back (immediately
>> after python25 was updated to 2.5.2).
>> Jack
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