Oops. I have my fink set to update with launchd and didn't catch the small version number difference when I checked before installing. I thought it updated already today.
Version 1002 builds and runs perfectly! Yeah! Cheers, Michelle Gill On May 9, 2008, at 6:22 PM, Jack Howarth wrote: > Michelle, > You are still building pymol-py25-1.0r2-1001 and not > the newer pymol-py25-1.0r2-1002. Make sure you have > fink unstable enabled in /sw/etc/fink.conf and do > a 'fink selfupdate-cvs' to pull down the latest > info and patch for pymol-py before you try to rebuild > pymol-py25 again. > Jack > > On Fri, May 09, 2008 at 05:35:57PM -0500, Gill Michelle wrote: >> Unfortunately, I still get the same error--see below. If I can >> provide more >> info, let me know. >> >> Michelle Gill >> >> gcc -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes >> -I/sw/include/python2.5 -I/sw/include/python2.5 -I/sw/include -c >> ././ExtensionClass.c -o ./ExtensionClass.o >> ././ExtensionClass.c: In function 'initializeBaseExtensionClass': >> ././ExtensionClass.c:1542: warning: passing argument 2 of >> 'PyMapping_HasKeyString' discards qualifiers from pointer target type >> ././ExtensionClass.c:1553: warning: passing argument 3 of >> 'newCMethod' >> discards qualifiers from pointer target type >> ././ExtensionClass.c:1553: warning: passing argument 6 of >> 'newCMethod' >> discards qualifiers from pointer target type >> ././ExtensionClass.c:1561: warning: passing argument 3 of >> 'newCMethod' >> discards qualifiers from pointer target type >> ././ExtensionClass.c:1561: warning: passing argument 6 of >> 'newCMethod' >> discards qualifiers from pointer target type >> ././ExtensionClass.c:1570: warning: passing argument 2 of >> 'PyMapping_SetItemString' discards qualifiers from pointer target >> type >> ././ExtensionClass.c:1580: warning: passing argument 2 of >> 'PyMapping_GetItemString' discards qualifiers from pointer target >> type >> ././ExtensionClass.c:1583: warning: assignment discards qualifiers >> from >> pointer target type >> ././ExtensionClass.c: At top level: >> ././ExtensionClass.c:2870: warning: initialization from incompatible >> pointer type >> ././ExtensionClass.c:2872: warning: 'intargfunc' is deprecated >> ././ExtensionClass.c:2872: warning: initialization from incompatible >> pointer type >> ././ExtensionClass.c:2873: warning: 'intargfunc' is deprecated >> ././ExtensionClass.c:2873: warning: initialization from incompatible >> pointer type >> ././ExtensionClass.c:2874: warning: 'intintargfunc' is deprecated >> ././ExtensionClass.c:2874: warning: initialization from incompatible >> pointer type >> ././ExtensionClass.c:2875: warning: initialization from incompatible >> pointer type >> ././ExtensionClass.c:2876: warning: initialization from incompatible >> pointer type >> ././ExtensionClass.c:2988: warning: initialization from incompatible >> pointer type >> ././ExtensionClass.c: In function 'CopyMethods': >> ././ExtensionClass.c:3267: warning: passing argument 2 of >> 'PyDict_Next' >> from incompatible pointer type >> ./ExtensionClass.o -o ./ExtensionClass.so >> make[2]: execvp: ./ExtensionClass.o: Permission denied >> make[2]: *** [ExtensionClass.so] Error 127 >> make[1]: *** [make-modules] Error 2 >> make: *** [unix] Error 2 >> ### execution of make failed, exit code 2 >> Removing runtime build-lock... >> Removing build-lock package... >> /sw/bin/dpkg-lockwait -r fink-buildlock-pymol-py25-1.0r2-1001 >> (Reading database ... 15577 files and directories currently >> installed.) >> Removing fink-buildlock-pymol-py25-1.0r2-1001 ... >> Failed: phase compiling: pymol-py25-1.0r2-1001 failed >> >> On May 9, 2008, at 3:57 PM, Jack Howarth wrote: >> >>> Michelle and Michael, >>> Try the new pymol-py-1.0r2-1002 packaging in fink 10.4/10.5 >>> unstable. I've hacked around the problem of the python from >>> the python2.5 package incorrectly generating the Makefile in >>> contrib/modules. The package should build fine now although >>> we still need to figure exactly what change was made recently >>> in python25 which caused this problem. I am certain that >>> pymol-py25 was building fine just a few weeks back (immediately >>> after python25 was updated to 2.5.2). >>> Jack ------------------------------------------------------------------------- This SF.net email is sponsored by the 2008 JavaOne(SM) Conference Don't miss this year's exciting event. There's still time to save $100. Use priority code J8TL2D2. http://ad.doubleclick.net/clk;198757673;13503038;p?http://java.sun.com/javaone _______________________________________________ Fink-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/fink-users
