Thanks. No I did not get the original reply. Will look for that other library and move it out of the way.
-roy M. On May 9, 2009, at 5:26 PM, Alexander Hansen wrote: > Roy Mendelssohn wrote: >> Hi All: >> >> I sent this once and got no reply. This failure is blocking me from >> updating either HDF or netcdf, no certain which. If someone has a >> solution, I would appreciate it. >> >> Info: >> >> Computer: Intel MacBook Pro with 2.2 Ghz Intel Core 2 Duo >> >> fink --version >> Package manager version: 0.29.2 >> Distribution version: selfupdate-rsync Mon May 4 13:09:21 2009, >> 10.5, i386 >> >> gcc --version >> i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5490) >> >> Error: >> >> >>> Making all in java-math >>> if /bin/sh ../../../libtool --tag=CC --mode=compile /sw/src/ >>> fink.build/gcc44-4.4.0-1000/darwin_objdir/./gcc/xgcc -B/sw/src/ >>> fink.build/gcc44-4.4.0-1000/darwin_objdir/./gcc/ -B/sw/lib/gcc4.4/ >>> i686-apple-darwin9/bin/ -B/sw/lib/gcc4.4/i686-apple-darwin9/lib/ - >>> isystem /sw/lib/gcc4.4/i686-apple-darwin9/include -isystem /sw/lib/ >>> gcc4.4/i686-apple-darwin9/sys-include -DHAVE_CONFIG_H -I. - >>> I../../../../../../../gcc-4.4.0/libjava/classpath/native/jni/java- >>> math -I../../../include -I../../../../../../../gcc-4.4.0/libjava/ >>> classpath/include -I../../../../../../../gcc-4.4.0/libjava/ >>> classpath/ >>> native/jni/classpath -I../../../../../../../gcc-4.4.0/libjava/ >>> classpath/native/jni/native-lib -I/sw/include -W -Wall -Wmissing- >>> declarations -Wwrite-strings -Wmissing-prototypes -Wno-long-long - >>> I/ >>> usr/include -g -O2 -MT gnu_java_math_GMP.lo -MD -MP -MF ".deps/ >>> gnu_java_math_GMP.Tpo" -c -o >>> gnu_java_math_GMP.lo ../../../../../../../gcc-4.4.0/libjava/ >>> classpath/native/jni/java-math/gnu_java_math_GMP.c; \ >>> then mv -f ".deps/gnu_java_math_GMP.Tpo" ".deps/ >>> gnu_java_math_GMP.Plo"; else rm -f ".deps/gnu_java_math_GMP.Tpo"; >>> exit 1; fi >>> libtool: compile: /sw/src/fink.build/gcc44-4.4.0-1000/ >>> darwin_objdir/./gcc/xgcc -B/sw/src/fink.build/gcc44-4.4.0-1000/ >>> darwin_objdir/./gcc/ -B/sw/lib/gcc4.4/i686-apple-darwin9/bin/ -B/sw/ >>> lib/gcc4.4/i686-apple-darwin9/lib/ -isystem /sw/lib/gcc4.4/i686- >>> apple-darwin9/include -isystem /sw/lib/gcc4.4/i686-apple-darwin9/ >>> sys- >>> include -DHAVE_CONFIG_H -I. -I../../../../../../../gcc-4.4.0/ >>> libjava/ >>> classpath/native/jni/java-math -I../../../include - >>> I../../../../../../../gcc-4.4.0/libjava/classpath/include - >>> I../../../../../../../gcc-4.4.0/libjava/classpath/native/jni/ >>> classpath -I../../../../../../../gcc-4.4.0/libjava/classpath/native/ >>> jni/native-lib -I/sw/include -W -Wall -Wmissing-declarations - >>> Wwrite- >>> strings -Wmissing-prototypes -Wno-long-long -I/usr/include -g -O2 - >>> MT gnu_java_math_GMP.lo -MD -MP -MF .deps/gnu_java_math_GMP.Tpo - >>> c ../../../../../../../gcc-4.4.0/libjava/classpath/native/jni/java- >>> math/gnu_java_math_GMP.c -fno-common -DPIC -o .libs/ >>> gnu_java_math_GMP.o >>> /bin/sh ../../../libtool --tag=CC --mode=link /sw/src/fink.build/ >>> gcc44-4.4.0-1000/darwin_objdir/./gcc/xgcc -B/sw/src/fink.build/ >>> gcc44-4.4.0-1000/darwin_objdir/./gcc/ -B/sw/lib/gcc4.4/i686-apple- >>> darwin9/bin/ -B/sw/lib/gcc4.4/i686-apple-darwin9/lib/ -isystem /sw/ >>> lib/gcc4.4/i686-apple-darwin9/include -isystem /sw/lib/gcc4.4/i686- >>> apple-darwin9/sys-include -W -Wall -Wmissing-declarations -Wwrite- >>> strings -Wmissing-prototypes -Wno-long-long -I/usr/include -g -O2 >>> -version-info 0:0:0 -no-undefined -lgmp -o libjavamath.la -rpath / >>> sw/lib/gcc4.4/lib/gcj-4.4.0-10 -version-info 0:0:0 -no-undefined - >>> lgmp -avoid-version gnu_java_math_GMP.lo ../../../native/jni/ >>> classpath/jcl.lo >>> libtool: link: /sw/src/fink.build/gcc44-4.4.0-1000/darwin_objdir/./ >>> gcc/xgcc -B/sw/src/fink.build/gcc44-4.4.0-1000/darwin_objdir/./ >>> gcc/ - >>> B/sw/lib/gcc4.4/i686-apple-darwin9/bin/ -B/sw/lib/gcc4.4/i686-apple- >>> darwin9/lib/ -isystem /sw/lib/gcc4.4/i686-apple-darwin9/include - >>> isystem /sw/lib/gcc4.4/i686-apple-darwin9/sys-include -dynamiclib - >>> o .libs/libjavamath.dylib .libs/gnu_java_math_GMP.o ../../../ >>> native/ >>> jni/classpath/.libs/jcl.o /usr/local/lib/libgmp.a - >>> install_name /sw/lib/gcc4.4/lib/gcj-4.4.0-10/libjavamath.dylib - >>> Wl,-single_module >>> ld warning: codegen in ___gmpn_popcount (offset 0x00000007) prevents >>> image from loading in dyld shared cache >>> ld warning: codegen in ___gmpn_popcount (offset 0x0000000E) prevents >>> image from loading in dyld shared cache >>> ld warning: codegen in ___gmpn_popcount (offset 0x00000015) prevents >>> image from loading in dyld shared cache >>> ld: absolute addressing (perhaps -mdynamic-no-pic) used in >>> ___gmpn_add_n from /usr/local/lib/libgmp.a(add_n.o) not allowed in >>> slidable image. Use '-read_only_relocs suppress' to enable text >>> relocs >>> collect2: ld returned 1 exit status >>> make[6]: *** [libjavamath.la] Error 1 >>> make[5]: *** [all-recursive] Error 1 >>> make[4]: *** [all-recursive] Error 1 >>> make[3]: *** [all-recursive] Error 1 >>> make[2]: *** [all-recursive] Error 1 >>> make[1]: *** [all-target-libjava] Error 2 >>> make: *** [all] Error 2 >>> ### execution of /var/tmp/tmp.1.zzBkye failed, exit code 2 >>> Removing runtime build-lock... >>> Removing build-lock package... >>> /sw/bin/dpkg-lockwait -r fink-buildlock-gcc44-4.4.0-1000 >>> (Reading database ... 110047 files and directories currently >>> installed.) >>> Removing fink-buildlock-gcc44-4.4.0-1000 ... >>> Failed: phase compiling: gcc44-4.4.0-1000 failed >>> >> >> Thanks, >> >> -Roy M. >> >> ********************** >> "The contents of this message do not reflect any position of the U.S. >> Government or NOAA." >> ********************** >> Roy Mendelssohn >> Supervisory Operations Research Analyst >> NOAA/NMFS >> Environmental Research Division >> Southwest Fisheries Science Center >> 1352 Lighthouse Avenue >> Pacific Grove, CA 93950-2097 >> >> e-mail: [email protected] (Note new e-mail address) >> voice: (831)-648-9029 >> fax: (831)-648-8440 >> www: http://www.pfeg.noaa.gov/ >> >> "Old age and treachery will overcome youth and skill." >> "From those who have been given much, much will be expected" >> >> > Possibly the reply got blocked? I'm showing the following reply from > Martin C: > > http://article.gmane.org/gmane.os.macosx.fink.user/28551 > > In any case: it looks like you're getting interference from a non- > fink > gmp in /usr/local; so our usual protocol is to advise moving that > out of > the way while you build. > > There's also an unofficial repository that has a binary for gcc44, > accessible via adding the following to your /sw/etc/apt/sources.list: > > deb http://sage.ucsc.edu/fink_intel_10.5_only stable main crypto > deb http://sage.ucsc.edu/fink_intel_10.5_only unstable main crypto > > > > -- > Alexander Hansen > Fink User Liaison > ********************** "The contents of this message do not reflect any position of the U.S. Government or NOAA." ********************** Roy Mendelssohn Supervisory Operations Research Analyst NOAA/NMFS Environmental Research Division Southwest Fisheries Science Center 1352 Lighthouse Avenue Pacific Grove, CA 93950-2097 e-mail: [email protected] (Note new e-mail address) voice: (831)-648-9029 fax: (831)-648-8440 www: http://www.pfeg.noaa.gov/ "Old age and treachery will overcome youth and skill." 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