Yes its an Atlas problem. I set for a single processor but the results are the
same as far as I can see.
The machine description and error message are below
sysctl -A 2>/dev/null|fgrep machdep.cpu.brand_string
machdep.cpu.brand_string: Intel(R) Core(TM) i7-2720QM CPU @ 2.20GHz
make[7]: *** [dinstall_cpsc] Bus error
make[6]: *** [Make_dcpsc] Error 2
make[5]: *** [dgen] Error 2
make[4]: *** [dlib] Error 2
make[3]: *** [lib.grd] Error 2
make[2]: *** [IStage1] Error 2
ERROR 577 DURING CACHESIZE SEARCH!!. CHECK INSTALL_LOG/Stage1.log FOR DETAILS.
cd /sw/src/fink.build/atlas-3.9.11-11/bld ; make error_report
make -f Make.top error_report
uname -a 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
gcc -v 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
Using built-in specs.
Target: i386-apple-darwin10.8.0
Configured with: ../gcc-4.4.6/configure --prefix=/sw --prefix=/sw/lib/gcc4.4
--mandir=/sw/share/man --infodir=/sw/lib/gcc4.4/info
--enable-languages=c,c++,fortran,objc,obj-c++,java --with-gmp=/sw
--with-libiconv-prefix=/sw --without-ppl --without-cloog --with-mpc=/sw
--with-system-zlib --x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib
--program-suffix=-fsf-4.4
Thread model: posix
gcc version 4.4.6 (GCC)
gcc -V 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
gcc: '-V' option must have argument
make[4]: [error_report] Error 1 (ignored)
gcc --version 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
tar cf error_UNKNOWNx8632SSE3.tar Make.inc bin/INSTALL_LOG/*
gzip --best error_UNKNOWNx8632SSE3.tar
mv error_UNKNOWNx8632SSE3.tar.gz error_UNKNOWNx8632SSE3.tgz
Error report error_<ARCH>.tgz has been created in your top-level ATLAS
directory. Be sure to include this file in any help request.
cat: ../../CONFIG/error.txt: No such file or directory
cat: ../../CONFIG/error.txt: No such file or directory
make[1]: *** [build] Error 255
make: *** [build] Error 2
### execution of /var/tmp/tmp.2.hscx4E failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-atlas-3.9.11-11
(Reading database ... 342489 files and directories currently installed.)
Removing fink-buildlock-atlas-3.9.11-11 ...
Failed: phase compiling: atlas-3.9.11-11 failed
------------------------------------------------------------------
Professor Don Paul
Superconductivity & Magnetism Group
Department of Physics
University of Warwick
Coventry CV4 7AL
United Kingdom
email [email protected]
tel 024 76 523603
------------------------------------------------------------------
On 6 Oct 2011, at 14:14, Alexander Hansen wrote:
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA1
>
> On 10/6/11 5:36 AM, Don Paul wrote:
>> Is it just me or is there still a problem with Octave in the Atlas
>> variant?
>>
>> touch dlib.grd make[8]: *** [tstlib.grd] Error 2 TST: make drottest
>> urout=rot1_x1y1.c opt="" cd
>> /sw/src/fink.build/atlas-3.9.11-11/bld/src/testing ; make lib
>> make[8]: *** read jobs pipe: No such file or directory. Stop.
>> make[8]: *** Waiting for unfinished jobs.... make -j 8 dlib.grd
>> make[9]: *** read jobs pipe: No such file or directory. Stop.
>> make[9]: *** Waiting for unfinished jobs.... make[10]: warning: -jN
>> forced in submake: disabling jobserver mode. make[10]: `dlib.grd'
>> is up to date. make[8]: *** [tstlib.grd] Error 2 TST: make drottest
>> urout=rot4_x1y1.c opt="" cd
>> /sw/src/fink.build/atlas-3.9.11-11/bld/src/testing ; make lib
>> make[8]: *** read jobs pipe: No such file or directory. Stop.
>> make[8]: *** Waiting for unfinished jobs.... make -j 8 dlib.grd
>> make[9]: *** read jobs pipe: No such file or directory. Stop.
>> make[9]: *** Waiting for unfinished jobs.... make[10]: warning: -jN
>> forced in submake: disabling jobserver mode. make[10]: `dlib.grd'
>> is up to date. make[8]: *** [tstlib.grd] Error 2 NO GENERAL CASE
>> SURVIVED!! ABORTING!! ID incX incY alpha beta ROUT ==== ====
>> ==== ===== ==== ============= 1 0 0 2 2
>> rot1_x0y0.c 2 1 1 2 2 rot1_x1y1.c 3 1 1
>> 2 2 rot4_x1y1.c
>>
>> make[7]: *** [dinstall_rot] Error 255 make[6]: *** [Make_drot]
>> Error 2 make[5]: *** [dgen] Error 2 make[4]: *** [dlib] Error 2
>> make[3]: *** [lib.grd] Error 2 make[2]: *** [IStage1] Error 2 ERROR
>> 577 DURING CACHESIZE SEARCH!!. CHECK INSTALL_LOG/Stage1.log FOR
>> DETAILS. cd /sw/src/fink.build/atlas-3.9.11-11/bld ; make
>> error_report make -f Make.top error_report uname -a 2>&1 >>
>> bin/INSTALL_LOG/ERROR.LOG gcc -v 2>&1 >>
>> bin/INSTALL_LOG/ERROR.LOG Using built-in specs. Target:
>> i386-apple-darwin10.8.0 Configured with: ../gcc-4.4.6/configure
>> --prefix=/sw --prefix=/sw/lib/gcc4.4 --mandir=/sw/share/man
>> --infodir=/sw/lib/gcc4.4/info
>> --enable-languages=c,c++,fortran,objc,obj-c++,java --with-gmp=/sw
>> --with-libiconv-prefix=/sw --without-ppl --without-cloog
>> --with-mpc=/sw --with-system-zlib --x-includes=/usr/X11R6/include
>> --x-libraries=/usr/X11R6/lib --program-suffix=-fsf-4.4 Thread
>> model: posix gcc version 4.4.6 (GCC) gcc -V 2>&1 >>
>> bin/INSTALL_LOG/ERROR.LOG gcc: '-V' option must have argument
>> make[4]: [error_report] Error 1 (ignored) gcc --version 2>&1 >>
>> bin/INSTALL_LOG/ERROR.LOG tar cf error_UNKNOWNx8632SSE3.tar
>> Make.inc bin/INSTALL_LOG/* gzip --best error_UNKNOWNx8632SSE3.tar
>> mv error_UNKNOWNx8632SSE3.tar.gz error_UNKNOWNx8632SSE3.tgz Error
>> report error_<ARCH>.tgz has been created in your top-level ATLAS
>> directory. Be sure to include this file in any help request. cat:
>> ../../CONFIG/error.txt: No such file or directory cat:
>> ../../CONFIG/error.txt: No such file or directory make[1]: ***
>> [build] Error 255 make: *** [build] Error 2 ### execution of
>> /var/tmp/tmp.2.CliuL5 failed, exit code 2 Removing runtime
>> build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait
>> -r fink-buildlock-atlas-3.9.11-11 (Reading database ... 342489
>> files and directories currently installed.) Removing
>> fink-buildlock-atlas-3.9.11-11 ... Failed: phase compiling:
>> atlas-3.9.11-11 failed
>>
>> Before reporting any errors, please run "fink selfupdate" and try
>> again. If you continue to have issues, please check to see if the
>> FAQ on Fink's website solves the problem. If not, ask on one of
>> these mailing lists:
>>
>> The Fink Users List <[email protected]> The Fink
>> Beginners List <[email protected]>.
>>
>> Please try to include the complete error message in your report.
>> This generally consists of a compiler line starting with e.g. "gcc"
>> or "g++" followed by the actual error output from the compiler.
>>
>> Also include the following system information: Package manager
>> version: 0.31.2 Distribution version: selfupdate-rsync Wed Oct 5
>> 23:00:26 2011, 10.6, i386 Trees: local/main stable/main
>> stable/crypto unstable/main unstable/crypto Xcode: 3.2.6
>>
>> ------------------------------------------------------------------
>> Professor Don Paul Superconductivity & Magnetism Group Department
>> of Physics University of Warwick Coventry CV4 7AL United Kingdom
>>
>> email [email protected] tel 024 76 523603
>> ------------------------------------------------------------------
>>
>>
>>
>>
>>
>
> That's a problem with atlas. The fact that you want octave is immaterial.
>
> Try using "fink configure" and choose to use a single processor. Then
> please post back regardless of whether you're successful or not: if
> you're successful we'll want to mark atlas as being for single build
> threads only, and if not we'll dig further into the issue.
> - --
> Alexander Hansen, Ph.D.
> Fink User Liaison
> http://finkakh.wordpress.com/
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