|
Hi, I
have problems with the convert/average
procedure. I
acquired 124 sagittal slices with a SPGR sequence. Is the conversion from
sagittal plane to coronal plane included in this
step? I
tried to load .dcm and. img files. First of all, are they both compatible with
mri_convert? I
tried with 1 volume file in analyze format, but Freesurfer didn’t recognize the
header and I had to set it manually. I noted that, even giving the command save,
a new file .hdr was not created at this point: the .hdr file created when
converting from dcm to analyze was only present in the folder. Then it asked
also for .dcm files. This
is the error it gave me, after starting the volume
interpolation: reading
/binfs/freesurfer_alpha/subjects/provaANAsag/mri/orig/001/1.2.840.113619.2.135.3596.375144.5930.1108451068i00001.hdr... mri_read():
couldn't determine type of file
/binfs/freesurfer_alpha/subjects/provaANAsag/mri/orig/001/1.2.840.113619.2.135.3596.375144.5930.1108451068i00001.hdr /binfs/freesurfer_alpha/bin/Linux/mri_average:
MRIread(/binfs/freesurfer_alpha/subjects/provaANAsag/mri/orig/001/1.2.840.113619.2.135.3596.375144.5930.1108451068i00001.hdr)
failed Thanks in advance, Laura
Bonzano |
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